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View Structure Prediction Details

Protein: DRG2_ARATH
Organism: Arabidopsis thaliana
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DRG2_ARATH.

Description E-value Query
Range
Subject
Range
gi|222631265, gi... - gi|55167981|gb|AAV43849.1| putative GTP binding protein [Oryza sativa Japonica Group], gi|222631265|...
gi|218196625 - gi|218196625|gb|EEC79052.1| hypothetical protein OsI_19615 [Oryza sativa Indica Group]
317.0 [0..1] [398..1]

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Predicted Domain #1
Region A:
Residues: [1-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIVERIKEI EAEMARTQKN KATEYHLGQL KAKIAKLRTQ LLEPPKGSSG GGDGFEVTKY  60
   61 GHGRVALIGF PSVGKSTLLT MLTGTHSEAA SYEFTTLTCI PGVIHYNDTK IQLLDLPGII 120
  121 EGASEGKGRG RQVIAVAKSS DLVLMVLDAS KSEGHRQILT KELEAVGLRL NKRPPQIYFK 180
  181 KKKTGGISFN TTTPLTRIDE KLCYQILHEY KIHNAEVLFR EDATVDDFID VVEGNRKYIK 240
  241 CVYVYNKIDV VGIDDVDRLA RQPNSIVISC NLKLNLDRLL ARMWDEMGLV RVYSKPQSQQ 300
  301 PDFDEPFVLS ADRGGCTVED FCNQVHRTLV KDMKYALVWG TSARHYPQHC GLFHHLEDED 360
  361 VVQIVKKKVR EEGGRGRFKS HSNAPARIAD REKKAPLKQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.30103
Match: 1udxA
Description: Crystal structure of the conserved protein TT1381 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.64537357529343 bayes_pls_golite062009
nucleic acid binding 2.09956015274464 bayes_pls_golite062009
transcription regulator activity 2.09345198747025 bayes_pls_golite062009
guanyl nucleotide binding 1.89320355239381 bayes_pls_golite062009
guanyl ribonucleotide binding 1.88721318481223 bayes_pls_golite062009
GTP binding 1.87900088157196 bayes_pls_golite062009
DNA binding 1.87765278833074 bayes_pls_golite062009
GTPase activity 1.23010905798386 bayes_pls_golite062009
purine ribonucleotide binding 1.21658213854831 bayes_pls_golite062009
ribonucleotide binding 1.21652144153182 bayes_pls_golite062009
purine nucleotide binding 1.21571071905795 bayes_pls_golite062009
nucleotide binding 1.20347573865566 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
motor activity 0.926612891775441 bayes_pls_golite062009
transcription factor activity 0.682439846757997 bayes_pls_golite062009
cytoskeletal protein binding 0.498311726132348 bayes_pls_golite062009
pyrophosphatase activity 0.219555040684154 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.198256709027213 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.197994873032963 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
structural constituent of ribosome 0.089234257580272 bayes_pls_golite062009
helicase activity 0.0775311459068899 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle