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View Structure Prediction Details

Protein: H3L2_ARATH
Organism: Arabidopsis thaliana
Length: 137 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for H3L2_ARATH.

Description E-value Query
Range		 Subject
Range
gi|88943485 - gi|88943485|ref|XP_497711.2| PREDICTED: similar to H3 histone, family 2 isoform 2 [Homo sapiens]
 235.0 [0..1] [137..45]

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Predicted Domain #1
Region A:
Residues: [1-137] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTKQTARK STGGKGPRKE LATKAARKTR RPYRGGVKRA HRFRPGTVAL REIRKYQKST  60
   61 DLLIRKLPFQ RLVREIAQDF KVDLRFQSHA VLALQEAAEA YLVGLFEDTN LCAIHAKRVT 120
  121 IMSKDIQLAR RIRGERA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.30103
Match: 1u35A
Description: Crystal structure of the nucleosome core particle containing the histone domain of macroH2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
general RNA polymerase II transcription factor activity 6.43582244485566 bayes_pls_golite062009
DNA binding 4.49118409263799 bayes_pls_golite062009
nucleic acid binding 4.35201412176948 bayes_pls_golite062009
transcription regulator activity 4.08606081850613 bayes_pls_golite062009
binding 3.27510691458843 bayes_pls_golite062009
centromeric DNA binding 2.60445660474495 bayes_pls_golite062009
transcription factor activity 2.51581622888695 bayes_pls_golite062009
RNA polymerase II transcription factor activity 2.38228606466152 bayes_pls_golite062009
transcription repressor activity 2.3574713307436 bayes_pls_golite062009
transcription initiation factor activity 1.57176056919918 bayes_pls_golite062009
transcription corepressor activity 1.30859203490073 bayes_pls_golite062009
histone acetyltransferase activity 1.30425023787663 bayes_pls_golite062009
lysine N-acetyltransferase activity 1.30425023787663 bayes_pls_golite062009
transcription activator activity 1.25487495162413 bayes_pls_golite062009
transcription factor binding 1.15204005455906 bayes_pls_golite062009
transcription coactivator activity 1.1297723528047 bayes_pls_golite062009
protein binding 1.07873333188144 bayes_pls_golite062009
transcription cofactor activity 1.01502031330902 bayes_pls_golite062009
histone binding 0.218942897869955 bayes_pls_golite062009
sequence-specific DNA binding 0.0852726470007639 bayes_pls_golite062009
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