| Protein: | SYFA_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 485 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYFA_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
444.0 | [0..4] | [485..8] |
|
Region A: Residues: [1-109] |
1 11 21 31 41 51
| | | | | |
1 MAEEAILGFL QNNEQITDSG QFSAEFNIDH NELVNVIKSL HGFRYIDVQD IKKETWILTD 60
61 EGKKYAAEGS PEVQLFLAVP EEGSISKDEL QKKLAPAVFK IGCSQAGKN
|
| Detection Method: |  |
| Confidence: | 1.98 |
| Match: | 1ixcA |
| Description: | LysR-type regulatory protein CbnR |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.09413019441785 | bayes_pls_golite062009 |
| nucleic acid binding | 2.8293727459515 | bayes_pls_golite062009 |
| DNA binding | 2.66906990480864 | bayes_pls_golite062009 |
| binding | 2.53822896550273 | bayes_pls_golite062009 |
| ligase activity | 2.33035084655874 | bayes_pls_golite062009 |
| transcription factor activity | 2.21460392371094 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.764002516817766 | bayes_pls_golite062009 |
| structural molecule activity | 0.756450227832198 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.665091289283954 | bayes_pls_golite062009 |
| protein binding | 0.626618806841206 | bayes_pls_golite062009 |
| transcription activator activity | 0.542530812773621 | bayes_pls_golite062009 |
| transcription repressor activity | 0.423955395883599 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.0907538697485439 | bayes_pls_golite062009 |
|
Region A: Residues: [110-485] |
1 11 21 31 41 51
| | | | | |
1 KWVEMGKQVS RKVKDVEDKV KGQLLQIQQG KEFDKESINS LKARKLIVPQ IWKGYSVKKG 60
61 PNYAPERKKV ATDLTRENLQ NWKELEFKEY NFKAKGAPVD AGHLHALLKV RKQFKDIFVQ 120
121 MGFEEMPTNN YVESSFWNFD ALFQPQQHPA RDSHDTFFLK VPSTTRTLPE DYVERVKRVH 180
181 ESGGYGSRGY NYDWKREEAN KNLLRTHTTA VSSRMLYALA QKPFVPKKYF SIDRVFRNEA 240
241 VDRTHLAEFH QIEGLICDRG LTLGDLIGVL EDFFSRLGMS KLRFKPAYNP YTEPSMEIFS 300
301 YHEGLGKWVE IGNSGMFRPE MLLPMGLPED VRVIAWGLSL ERPTMILYGI DNIRDLFGHK 360
361 VDLDLIKRNP ICRIGI
|
| Detection Method: | |
| Confidence: | 74.69897 |
| Match: | 1b70A |
| Description: | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| phenylalanine-tRNA ligase activity | 13.8919118344182 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 12.5698315343202 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 12.5698315343202 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 12.5592545638101 | bayes_pls_golite062009 |
| ligase activity | 6.92073480193262 | bayes_pls_golite062009 |
| glycine-tRNA ligase activity | 2.61548498770105 | bayes_pls_golite062009 |
| threonine-tRNA ligase activity | 2.18642354927 | bayes_pls_golite062009 |
| serine-tRNA ligase activity | 2.07594942154162 | bayes_pls_golite062009 |
| catalytic activity | 1.99372273395202 | bayes_pls_golite062009 |
| alanine-tRNA ligase activity | 1.82594054955281 | bayes_pls_golite062009 |
| lysine-tRNA ligase activity | 1.72324031407565 | bayes_pls_golite062009 |
| histidine-tRNA ligase activity | 1.72215103383322 | bayes_pls_golite062009 |
| asparagine-tRNA ligase activity | 0.921492123574877 | bayes_pls_golite062009 |
| binding | 0.705666054154871 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 0.00572514744734753 | bayes_pls_golite062009 |
