| Protein: | NRPB7_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 176 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRPB7_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
146.0 | [0..1] | [169..24] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MFFHIVLERN MQLHPRFFGR NLKENLVSKL MKDVEGTCSG RHGFVVAITG IDTIGKGLIR 60
61 DGTGFVTFPV KYQCVVFRPF KGEILEAVVT LVNKMGFFAE AGPVQIFVSK HLIPDDMEFQ 120
121 AGDMPNYTTS DGSVKIQKEC EVRLKIIGTR VDATAIFCVG TIKDDFLGVI NDPAAA
|
| Detection Method: |  |
| Confidence: | 32.69897 |
| Match: | 2c35B |
| Description: | Subunits Rpb4 and Rpb7 of human RNA polymerase II |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA polymerase activity | 8.99678434167899 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 8.99678434167899 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 6.44182740737882 | bayes_pls_golite062009 |
| structural constituent of ribosome | 5.1118741250402 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 4.85462508375149 | bayes_pls_golite062009 |
| structural molecule activity | 4.51553901145182 | bayes_pls_golite062009 |
| transferase activity | 3.90847350895308 | bayes_pls_golite062009 |
| ribonuclease activity | 3.83159232224897 | bayes_pls_golite062009 |
| DNA binding | 3.53568546959418 | bayes_pls_golite062009 |
| RNA binding | 3.49834780836233 | bayes_pls_golite062009 |
| 2.80746531284205 | bayes_pls_golite062009 | |
| nucleic acid binding | 2.41557476646435 | bayes_pls_golite062009 |
| exoribonuclease activity | 2.41262897171619 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 2.38378389593693 | bayes_pls_golite062009 |
| transcription regulator activity | 2.10110937001387 | bayes_pls_golite062009 |
| binding | 1.9712766790272 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.81524862921454 | bayes_pls_golite062009 |
| mRNA binding | 1.660993824641 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.62996999055328 | bayes_pls_golite062009 |
| protein binding | 1.55473080522232 | bayes_pls_golite062009 |
| translation regulator activity | 1.46320772716954 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 1.40718318783582 | bayes_pls_golite062009 |
| translation initiation factor activity | 1.27539679024898 | bayes_pls_golite062009 |
| transcription activator activity | 1.09079153283893 | bayes_pls_golite062009 |
| catalytic activity | 1.02941336036162 | bayes_pls_golite062009 |
| transcription factor activity | 0.937752547283357 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.85691075793641 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.83268201349295 | bayes_pls_golite062009 |
| hydrolase activity | 0.724860465280978 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.583085644017496 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 0.474251377131502 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 0.47336621289748 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 0.47336621289748 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.223941674251642 | bayes_pls_golite062009 |
