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View Structure Prediction Details

Protein: PRP43_ARATH
Organism: Arabidopsis thaliana
Length: 729 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP43_ARATH.

Description E-value Query
Range		 Subject
Range
DEAH2_ARATH - Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 OS=Arabidopsis thaliana GN=At3g62...
 660.0 [0..1] [729..1]

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Predicted Domain #1
Region A:
Residues: [1-447] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE  60
   61 KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ FVLDAVVADN SDKGRKWLVG 120
  121 CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP 180
  181 LLERYKVIIL DEAHERTLAT DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL 240
  241 MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN 300
  301 KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT 360
  361 IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR SGRAGRTRPG KCFRLYTEKS 420
  421 FNNDLQPQTY PEILRSNLAN TVLTLKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.30103
Match: 2hyiC
Description: No description for 2hyiC was found.

Predicted functions:

Term Confidence Notes
4.704140727858 bayes_pls_golite062009
binding 2.44689197844883 bayes_pls_golite062009
RNA binding 2.29590582680214 bayes_pls_golite062009
structural constituent of ribosome 1.57653963868443 bayes_pls_golite062009
RNA helicase activity 1.42791449104435 bayes_pls_golite062009
nucleic acid binding 1.41477043612798 bayes_pls_golite062009
RNA-dependent ATPase activity 1.39335733374328 bayes_pls_golite062009
ATP-dependent RNA helicase activity 1.36724390116598 bayes_pls_golite062009
DNA binding 1.11699929651302 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
transcription regulator activity 0.989226939888218 bayes_pls_golite062009
mRNA binding 0.76699944561918 bayes_pls_golite062009
helicase activity 0.6191010101321 bayes_pls_golite062009
motor activity 0.61636596887462 bayes_pls_golite062009
structural molecule activity 0.596382945962261 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.461763181659193 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.458831409927227 bayes_pls_golite062009
pyrophosphatase activity 0.455976987338331 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.422944846459286 bayes_pls_golite062009
snRNA binding 0.418985924846052 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 0.338958888186454 bayes_pls_golite062009
purine NTP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
ATP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
translation release factor activity 0.178286731022211 bayes_pls_golite062009
translation termination factor activity 0.151456842619444 bayes_pls_golite062009
nucleotide binding 0.114848452385726 bayes_pls_golite062009
purine nucleotide binding 0.10713474095071 bayes_pls_golite062009
purine ribonucleotide binding 0.0916519414118148 bayes_pls_golite062009
ribonucleotide binding 0.0915913646217636 bayes_pls_golite062009
protein binding 0.071010918255742 bayes_pls_golite062009
transcription factor activity 0.0434163635422169 bayes_pls_golite062009
cytoskeletal protein binding 0.0272673919333979 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [448-578] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGIDDLVHFD FMDPPAPETL MRALEVLNYL GALDDEGNLT KTGEIMSEFP LDPQMSKMLI  60
   61 VSPEFNCSNE ILSVSAMLSV PNCFVRPREA QKAADEAKAR FGHIDGDHLT LLNVYHAYKQ 120
  121 NNEDPNWCFE N

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.49
Match: 2v8oA
Description: No description for 2v8oA was found.

Predicted Domain #3
Region A:
Residues: [579-729] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVNNRAMKSA DNVRQQLVRI MSRFNLKMCS TDFNSRDYYV NIRKAMLAGY FMQVAHLERT  60
   61 GHYLTVKDNQ VVHLHPSNCL DHKPEWVIYN EYVLTTRNFI RTVTDIRGEW LVDVAQHYYD 120
  121 LSNFPNCEAK RALEKLYKKR EREKNESKNR K

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.920819
Match: PF07717.7
Description: No description for PF07717.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle