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View Structure Prediction Details

Protein: ARGI1_ARATH
Organism: Arabidopsis thaliana
Length: 342 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARGI1_ARATH.

Description E-value Query
Range
Subject
Range
gi|13182957 - gi|13182957|gb|AAK15006.1| arginase [Brassica napus]
324.0 [0..1] [334..1]

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Predicted Domain #1
Region A:
Residues: [1-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIIGRKGI NYIHRLNSAS FTSVSASSIE KGQNRVIDAS LTLIRERAKL KGELVRLLGG  60
   61 AKASTSLLGV PLGHNSSFLQ GPAFAPPRIR EAIWCGSTNS ATEEGKELKD PRVLTDVGDV 120
  121 PVQEIRDCGV DDDRLMNVIS ESVKLVMEEE PLRPLVLGGD HSISYPVVRA VSEKLGGPVD 180
  181 ILHLDAHPDI YDCFEGNKYS HASSFARIME GGYARRLLQV GIRSINQEGR EQGKRFGVEQ 240
  241 YEMRTFSKDR PMLENLKLGE GVKGVYISID VDCLDPAFAP GVSHIEPGGL SFRDVLNILH 300
  301 NLQADVVGAD VVEFNPQRDT VDGMTAMVAA KLVRELAAKI SK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.0
Match: 1gq6A
Description: Proclavaminate amidino hydrolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
arginase activity 6.00681443593951 bayes_pls_golite062009
agmatinase activity 3.73238467801147 bayes_pls_golite062009
hydrolase activity 2.11707868768295 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.72243397396987 bayes_pls_golite062009
catalytic activity 1.68836803454021 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines 1.01223037319069 bayes_pls_golite062009
protein deacetylase activity 0.94998716163927 bayes_pls_golite062009
histone deacetylase activity 0.905952455299869 bayes_pls_golite062009
deacetylase activity 0.275968925511837 bayes_pls_golite062009
transcription factor binding 0.12258695349961 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 0.0917282383800223 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle