| Protein: | nhr-105 |
| Organism: | Caenorhabditis elegans |
| Length: | 429 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-105.
| Description | E-value | Query Range |
Subject Range |
|
|
279.0 | [0..3] | [423..23] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MTFSDPMDPS IPIFQHHEEE EAGPSTTIKA EEEDGPCCLV CGRVANTGHH YGVTACLGCK 60
61 TFFRRVVLQK NSPKCKYKNH CRLEKSVNAK RLCRSCRYQK CLEVGMTEDA
|
| Detection Method: |  |
| Confidence: | 18.0 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 2.96944106977308 | bayes_pls_golite062009 |
| DNA binding | 2.64662954118345 | bayes_pls_golite062009 |
| nucleic acid binding | 2.60185057203337 | bayes_pls_golite062009 |
| binding | 2.32420977112004 | bayes_pls_golite062009 |
| transcription factor activity | 1.93863380769331 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.48167714708574 | bayes_pls_golite062009 |
| protein binding | 1.39455913713025 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.71958532653437 | bayes_pls_golite062009 |
| transcription activator activity | 0.715538962910453 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 0.613774016982502 | bayes_pls_golite062009 |
| transcription factor binding | 0.52161600305754 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.36842807815039 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
|
Region A: Residues: [111-429] |
1 11 21 31 41 51
| | | | | |
1 LHPCRDVIGR RVRNNSSDSS PISSPPSIPT PLSICKLMNL SEGDHKLLQT ITDMDTDIRT 60
61 RTAHILGEPA NGNEQIHFYS PTPDYTNVIV NHGIGPSLKV DILLLREWVD RIPGFRELSE 120
121 RFQQHLMHRF CLRYTVIEHG LFTAQMPYHK NVWFLSDRTC LVSEFENLPQ EIKKHLTPKV 180
181 INEQQLLASF TEMLIHEVAD PLRRLKPDSV EVATVKTLML LKPTCLREID GDYLSTETDI 240
241 KSVNDVRNRV INGLYSHYIK NGMDPEQLPI RVSEILNLTG GVEQCAARAL EEMHPTRVFN 300
301 LSSFDPYSSN VIFGYYRDV
|
| Detection Method: | |
| Confidence: | 32.69897 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.49038190939006 | bayes_pls_golite062009 |
| DNA binding | 3.96083427960775 | bayes_pls_golite062009 |
| nucleic acid binding | 3.90952833171457 | bayes_pls_golite062009 |
| binding | 3.21329762799781 | bayes_pls_golite062009 |
| transcription factor activity | 3.12234353900549 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 3.01625722166173 | bayes_pls_golite062009 |
| transcription activator activity | 2.29529712113489 | bayes_pls_golite062009 |
| protein binding | 2.16479360297106 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.10605540558576 | bayes_pls_golite062009 |
| receptor activity | 2.07573173722434 | bayes_pls_golite062009 |
| transcription factor binding | 1.81682309019455 | bayes_pls_golite062009 |
| steroid hormone receptor activity | 1.46458984705588 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.4555195551904 | bayes_pls_golite062009 |
| transcription repressor activity | 1.33520830189299 | bayes_pls_golite062009 |
| signal transducer activity | 1.19872119297817 | bayes_pls_golite062009 |
| molecular transducer activity | 1.19872119297817 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.901297393989265 | bayes_pls_golite062009 |
| retinoic acid receptor binding | 0.520157552022887 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.4518457324832 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.36873580106364 | bayes_pls_golite062009 |
| retinoid X receptor binding | 0.250198693036147 | bayes_pls_golite062009 |
| catalytic activity | 0.106902059021677 | bayes_pls_golite062009 |
