| Protein: | mnat-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 310 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mnat-1.
| Description | E-value | Query Range |
Subject Range |
|
|
219.0 | [0..2] | [309..4] |
|
Region A: Residues: [1-63] |
1 11 21 31 41 51
| | | | | |
1 MKECKKCKSN EYTNKQLVMM INECGHPLCK NCVDNIFALN SGNCHVCNRV LRKNNFREQI 60
61 YED
|
| Detection Method: |  |
| Confidence: | 16.69897 |
| Match: | 1g25A |
| Description: | TFIIH Mat1 subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 6.51043144330453 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 3.14238164427954 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 3.12673603940339 | bayes_pls_golite062009 |
| binding | 2.78710909602478 | bayes_pls_golite062009 |
| transcription regulator activity | 2.72498741013971 | bayes_pls_golite062009 |
| protein binding | 2.64803540957326 | bayes_pls_golite062009 |
| nucleic acid binding | 2.32387297115017 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.10988747259202 | bayes_pls_golite062009 |
| DNA binding | 2.00904221080834 | bayes_pls_golite062009 |
| transcription activator activity | 1.45530270292081 | bayes_pls_golite062009 |
| transcription factor activity | 1.22579085356684 | bayes_pls_golite062009 |
| transcription factor binding | 1.11842175076436 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.926364718530146 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.90321253993065 | bayes_pls_golite062009 |
| hydrolase activity | 0.52386813728704 | bayes_pls_golite062009 |
| transcription repressor activity | 0.350170315296021 | bayes_pls_golite062009 |
| ligase activity | 0.34187399168736 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.255669498391574 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.233838999434784 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| enzyme binding | 0.104373352314595 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.024993043379745 | bayes_pls_golite062009 |
|
Region A: Residues: [64-310] |
1 11 21 31 41 51
| | | | | |
1 PLIDKETFLR RKLRKIYNLK QDDFENLREF GDYQERFETV VYNLVFETNV NETNAEIQAF 60
61 EEKHKEQIDR NKRRLDDDQK WIEDQLREER AMKARMTDHM EMDAKEQEAA SAVTDTRKIM 120
121 DELRDSNVAA EVILDRERKK QIEKELEEKE EQEKRKRRNK EMLQTRKRAA ENMSFNTVIR 180
181 VAGRAYVHQP LELVINGPPM PNVSEIEALG YLAHIRQPTA EYIAGGYTPM LGCSRALFEA 240
241 RIDLFSF
|
| Detection Method: | |
| Confidence: | 4.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
