| Protein: | mls-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 341 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mls-2.
| Description | E-value | Query Range |
Subject Range |
|
|
138.0 | [0..1] | [265..40] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MPTSVMNLPI DMTTMSSQER LEKMSQLPKI ELMEEEEEEE MKPSSDNKIK FNISELLEDD 60
61 RKPTTQSSPS ASSEDSTNEI EQTAFNFNFD PKMNPISALL QLQQTFLNVG NQQNMISPLT 120
121 MFPFFGLPTA QLMHFKNMSN PDVNIQSDNG EEKDEKSEGK DGETRDSTGG SPLESDAEDD 180
181 DDIGRGS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [188-341] |
1 11 21 31 41 51
| | | | | |
1 DDEANSSDPS QNRKKKTRTV FSRSQVSQLE MMFECKRYLS SQERSNLAQK LHLTETQVKI 60
61 WFQNRRNKFK RQAQTDDTNI SLQMHRANVF SIPATTALTS PILTIPTTSA GVNMRNMISS 120
121 PMDASATAAA RFLFGFGTLQ AQQNLNASAQ AQNM
|
| Detection Method: | |
| Confidence: | 26.69897 |
| Match: | 1homA |
| Description: | DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.09839603329852 | bayes_pls_golite062009 |
| DNA binding | 3.70287146988839 | bayes_pls_golite062009 |
| nucleic acid binding | 3.64380968064654 | bayes_pls_golite062009 |
| transcription factor activity | 3.09799997792958 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.60514736539172 | bayes_pls_golite062009 |
| binding | 2.38790799849051 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.24140562598253 | bayes_pls_golite062009 |
| transcription activator activity | 2.19769864782568 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| transcription repressor activity | 1.04797217475639 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.83458785143486 | bayes_pls_golite062009 |
| chromatin binding | 0.806325172844419 | bayes_pls_golite062009 |
| transcription factor binding | 0.54291661516816 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.012862302676295 | bayes_pls_golite062009 |
