| Protein: | cep-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 644 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cep-1.
| Description | E-value | Query Range |
Subject Range |
|
|
977.0 | [0..2] | [641..4] |
|
Region A: Residues: [1-216] |
1 11 21 31 41 51
| | | | | |
1 MEPDDSQLSD ILKDARIPDS QDIGVNLTQN LSFDTVQKMI DGVFTPIFSQ GTEDSLEKDI 60
61 LKTPGISTIY NGILGNGEET KKRTPKISDA FEPDLNTSGD VFDSDKSEDG LMNDESYLSN 120
121 TTLSQVVLDS QKYEYLRVRT EEEQQLVIEK RARERFIRKS MKIAEETALS YENDGSRELS 180
181 ETMTQKVTQM DFTETNVPFD GNDESSNLAV RVQSDM
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [217-432] |
1 11 21 31 41 51
| | | | | |
1 NLNEDCEKWM EIDVLKQKVA KSSDMAFAIS SEHEKYLWTK MGCLVPIQVK WKLDKRHFNS 60
61 NLSLRIRFVK YDKKENVEYA IRNPRSDVMK CRSHTEREQH FPFDSFFYIR NSEHEFSYSA 120
121 EKGSTFTLIM YPGAVQANFD IIFMCQEKCL DLDDRRKTMC LAVFLDDENG NEILHAYIKQ 180
181 VRIVAYPRRD WKNFCEREDA KQKDFRFPEL PAYKKA
|
| Detection Method: | |
| Confidence: | 111.0 |
| Match: | 1t4wA |
| Description: | Structural Differences in the DNA Binding Domains of Human p53 and its C. elegans Ortholog Cep-1: Structure of C. elegans Cep-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.48951024516114 | bayes_pls_golite062009 |
| transcription regulator activity | 2.08461887975954 | bayes_pls_golite062009 |
| DNA binding | 2.00590712396281 | bayes_pls_golite062009 |
| protein binding | 1.89777739609026 | bayes_pls_golite062009 |
| nucleic acid binding | 1.81190570165535 | bayes_pls_golite062009 |
| transcription factor activity | 1.47792643319772 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.83908184260106 | bayes_pls_golite062009 |
| transcription activator activity | 0.70688258731336 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.67114633230283 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.60405934196774 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.59003565500643 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.41353824553911 | bayes_pls_golite062009 |
|
Region A: Residues: [433-644] |
1 11 21 31 41 51
| | | | | |
1 SLESINIKQE VNLENMFNVT NTTAQMEPST SYSSPSNSNN RKRFLNECDS PNNDYTMMHR 60
61 TPPVTGYASR LHGCVPPIET EHENCQSPSM KRSRCTNYSF RTLTLSTAEY TKVVEFLARE 120
121 AKVPRYTWVP TQVVSHILPT EGLERFLTAI KAGHDSVLFN ANGIYTMGDM IREFEKHNDI 180
181 FERIGIDSSK LSKYYEAFLS FYRIQEAMKL PK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
