| Protein: | ncbp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 798 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ncbp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
898.0 | [0..1] | [797..122] |
|
Region A: Residues: [1-798] |
1 11 21 31 41 51
| | | | | |
1 MSRRRQFDDE DEVQMKRRRG APLIEDVEKK LQGVIGKVGE NTGSSIECNL DKLTAFLHDD 60
61 LEKYRASIID IIAGCAIYLP NRVTVYTTLV GLLNSKNFNF GGDVVEKLIS EQQDLLSKQK 120
121 YQEAQNLAIF LCDLGNSGVL TAQSIGEYLE SFIAAAFEEN MPQVRNDYYI QTVLRCLPWI 180
181 GKELTEKAPE QMENIGEAIG KYLELRNKNH VALLQVWREG STDQKQEDYL ESLSAQIEAL 240
241 RNADWVENHI PRHYSGFETT LQDALQHNLP SFQSPEHTSD MIYPYPLVVF RLFQDADCSA 300
301 FSSKPLPGDS SIDRFLFEGE IAWIIEKNQF NRKACARELL AFAEENPSVP IGFLIFETIF 360
361 GQMLRLPHAP YPAIFHCSLV LELLKLKPDD YPQILVQTVE CIYRRADSMQ PVCIDRMVDW 420
421 FSFHLSNFQY RYTWTDWKDC LNKDAFSGSQ IFVREVIEKC RRFGSYEKII AALPQDFVKI 480
481 HPCSPEVRYL IDEEDTALVQ RAETFTQMFQ ERQPAEAFLN ELKSNDENDE LPYNINEFGL 540
541 FVMVMLKMAS KTYSHNFSAL FRYQTTLKTV CDASELYQEK LLETLYSCWK TNQQMLMILT 600
601 DKLLKMQVID CSAVVGWLFD EKMWQEHDRQ WLFEVLNQAL EKLTRQINVV EKDIKELTEK 660
661 TENKIKEEDD EESDIKMDED ETKEEKFKQD LEDLENNKEK LERMVTFQKG LFNDFLIAFI 720
721 EEIKNAATSN TSEMDGSGDT PGTQTPKFMW LRGRFCHVLL AHAETLLKHS SNIADEVFSE 780
781 GTDPSIIECF NQFQSLRL
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1n52A |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA cap binding | 6.31996430626206 | bayes_pls_golite062009 |
| binding | 3.0667965351474 | bayes_pls_golite062009 |
| protein binding | 2.78733902345842 | bayes_pls_golite062009 |
| nucleic acid binding | 2.74745843355294 | bayes_pls_golite062009 |
| RNA binding | 2.62683106046883 | bayes_pls_golite062009 |
| transcription regulator activity | 1.90912542848632 | bayes_pls_golite062009 |
| DNA binding | 1.77040152722002 | bayes_pls_golite062009 |
| transcription activator activity | 1.33885628961586 | bayes_pls_golite062009 |
| transcription factor activity | 1.27944481949335 | bayes_pls_golite062009 |
| mRNA binding | 1.24616647164637 | bayes_pls_golite062009 |
| RNA 7-methylguanosine cap binding | 0.841392474686331 | bayes_pls_golite062009 |
| transcription factor binding | 0.00210118982863072 | bayes_pls_golite062009 |
