Protein: | clh-6 |
Organism: | Caenorhabditis elegans |
Length: | 796 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clh-6.
Description | E-value | Query Range |
Subject Range |
|
497.0 | [0..1] | [796..1] |
Region A: Residues: [1-88] |
1 11 21 31 41 51 | | | | | | 1 MTSRNRVRTS SNSLDPNEDP VSGLERVMSN SNLEHVARQR RRLEEELLFS RQLDDVGRTD 60 61 SHEALSARYE SLNYEISENR LYRDAEKK |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [89-608] |
1 11 21 31 41 51 | | | | | | 1 PSHQLTLWRI SRNRWFVCFL IGVFTGLVAA FIDIMVHYSK DIKFNWILKY LLSKCGEEQR 60 61 GTTAGCMWTV MIAWIGYNCV LVTIAAILVI YVAPIAGGSG IPQIKCYLNG IAIPEVVRLK 120 121 TLVSKAVGVA CSVGGGLCAG KEGPMIHSGA AVGAGISQGK SYSLGIDFGL FREFRNDREK 180 181 RDFVSAGAAA GVAAAFGAPI GGVLFSLEEG ASFWNQALTW RMFFSAMISS FTVNWILSWF 240 241 NGRSGWLSWT GLANFGVFEN KDYNIWEIPL FLLIGIIGGC LGALFNYLNT KLTEFRKKYV 300 301 SSKLGRLFEC LLVAAVSGFL AFLTIFAIDD CQPIGANPTA TSTQINQMWC KKGEYSAVAS 360 361 LFFQNPEESV KSMFHSPINS FGVTTLVIFG IEYFLLTLWT FGISVPSGVF IPAILTGAAW 420 421 GRLFGIFVER LFPSVTGIDP GKYALAGAAA QLGGVVRMTI SLTAIIMEAT KDITFGLPIM 480 481 LVLMVTKWVG DMFNEGLYDA HIDLAEVPIL GWNPPKMSRN |
Detection Method: | |
Confidence: | 54.69897 |
Match: | 1kplA |
Description: | Clc chloride channel |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
anion channel activity | 6.77290758049983 | bayes_pls_golite062009 |
chloride channel activity | 6.77290758049983 | bayes_pls_golite062009 |
anion transmembrane transporter activity | 6.08111514985329 | bayes_pls_golite062009 |
voltage-gated chloride channel activity | 5.99544422864122 | bayes_pls_golite062009 |
voltage-gated anion channel activity | 5.99544422864122 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 5.07840957725271 | bayes_pls_golite062009 |
ion channel activity | 4.93164650815682 | bayes_pls_golite062009 |
substrate-specific channel activity | 4.81149777353187 | bayes_pls_golite062009 |
channel activity | 4.78965126968592 | bayes_pls_golite062009 |
passive transmembrane transporter activity | 4.78965126968592 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 4.67227438984104 | bayes_pls_golite062009 |
voltage-gated ion channel activity | 4.27956097534048 | bayes_pls_golite062009 |
voltage-gated channel activity | 4.255638017629 | bayes_pls_golite062009 |
gated channel activity | 4.1072949331811 | bayes_pls_golite062009 |
transporter activity | 2.94995161862691 | bayes_pls_golite062009 |
transmembrane transporter activity | 2.84443650880263 | bayes_pls_golite062009 |
substrate-specific transporter activity | 2.82470397063503 | bayes_pls_golite062009 |
Region A: Residues: [609-796] |
1 11 21 31 41 51 | | | | | | 1 ILADRVMRKD VVALERRERV SRIVEILRST LHHGFPVVDR IEESPYESLP DYGRLKGYIL 60 61 RSQLFKLLEN RIFEEEGASN SALPNDFYEC QDDDDQMKSV AELGLTNFDE SCFLDIEPYM 120 121 HPHPHRVPLN TSLPFIFRLF RGLGLRYLFV VNDDNHLRGV ITRKDVARFR ERRRNREYHV 180 181 DELYISES |
Detection Method: | |
Confidence: | 17.69897 |
Match: | 2cu0A |
Description: | No description for 2cu0A was found. |