| Protein: | CE28910 |
| Organism: | Caenorhabditis elegans |
| Length: | 222 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28910.
| Description | E-value | Query Range |
Subject Range |
|
|
397.0 | [0..1] | [222..1] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MDFQNRAGGK TGSGGVASAA DAGVDRRERL RQLALETIDL QKDPYFMRNH IGTYECKLCL 60
61 TLHNNEGSYL AHTQGKKHQA NLARRAAKEQ SEQP
|
| Detection Method: |  |
| Confidence: | 1.63 |
| Match: | 1zr9A |
| Description: | Solution Structure of a Human C2H2-type Zinc Finger Protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.37529385176635 | bayes_pls_golite062009 |
| DNA binding | 3.3049326844117 | bayes_pls_golite062009 |
| nucleic acid binding | 3.24981360535232 | bayes_pls_golite062009 |
| snRNA binding | 3.16782731106334 | bayes_pls_golite062009 |
| RNA binding | 3.11293528368816 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.86343975521155 | bayes_pls_golite062009 |
| binding | 2.84954567129719 | bayes_pls_golite062009 |
| transcription factor activity | 2.44389510173662 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.57041104288348 | bayes_pls_golite062009 |
| mRNA binding | 1.28525296322454 | bayes_pls_golite062009 |
| transcription activator activity | 1.20323819132961 | bayes_pls_golite062009 |
| protein binding | 0.975412203442928 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.732558534458316 | bayes_pls_golite062009 |
| transcription repressor activity | 0.686318575498149 | bayes_pls_golite062009 |
| chromatin binding | 0.626365497850853 | bayes_pls_golite062009 |
| transcription factor binding | 0.515821187939278 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.200483461579207 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.113925660147477 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0855506955761403 | bayes_pls_golite062009 |
|
Region A: Residues: [95-222] |
1 11 21 31 41 51
| | | | | |
1 FLPAPQKAAV ETKKFVKIGR PGYKVTKERD PGAGQQALLF QIDYPEIADG IAPRHRFMSA 60
61 YEQKIQPPDK RWQYLLFAAE PYETIGFKIP SREVDKSEKF WTMWNKDTKQ FFLQVAFKLE 120
121 RLDDQPYY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
