| Protein: | skn-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 623 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for skn-1.
| Description | E-value | Query Range |
Subject Range |
|
|
316.0 | [0..66] | [614..68] |
|
Region A: Residues: [1-186] |
1 11 21 31 41 51
| | | | | |
1 MGGSSRRQRS TSATRRDDKR RRRQCFSSVA DDEEETTSIY GVSSIFIWIL ATSSLILVIS 60
61 SPSSNTSIQS SSYDRITTKH LLDNISPTFK MYTDSNNRNF DEVNHQHQQE QDFNGQSKYD 120
121 YPQFNRPMGL RWRDDQRMME YFMSNGPVET VPVMPILTEH PPASPFGRGP STERPTTSSR 180
181 YEYSSP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [187-366] |
1 11 21 31 41 51
| | | | | |
1 SLEDIDLIDV LWRSDIAGEK GTRQVAPADQ YECDLQTLTE KSTVAPLTAE ENARYEDLSK 60
61 GFYNGFFESF NNNQYQQKHQ QQQREQIKTP TLEHPTQKAE LEDDLFDEDL AQLFEDVSRE 120
121 EGQLNQLFDN KQQHPVINNV SLSEGIVYNQ ANLTEMQEMR DSCNQVSIST IPTTSTAQPE 180
181
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [367-538] |
1 11 21 31 41 51
| | | | | |
1 TLFNVTDSQT VEQWLPTEVV PNDVFPTSNY AYIGMQNDSL QAVVSNGQID YDHSYQSTGQ 60
61 TPLSPLIIGS SGRQQQTQTS PGSVTVTATA TQSLFDPYHS QRHSFSDCTT DSSSTCSRLS 120
121 SESPRYTSES STGTHESRFY GKLAPSSGSR YQRSSSPRSS QSSIKIARVV PL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [539-623] |
1 11 21 31 41 51
| | | | | |
1 ASGQRKRGRQ SKDEQLASDN ELPVSAFQIS EMSLSELQQV LKNESLSEYQ RQLIRKIRRR 60
61 GKNKVAARTC RQRRTDRHDK MSHYI
|
| Detection Method: | |
| Confidence: | 29.69897 |
| Match: | 1sknP |
| Description: | Skn-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56528092116191 | bayes_pls_golite062009 |
| DNA binding | 4.39236205038451 | bayes_pls_golite062009 |
| nucleic acid binding | 4.27517034548789 | bayes_pls_golite062009 |
| transcription factor activity | 3.86034396858961 | bayes_pls_golite062009 |
| binding | 3.28937567198027 | bayes_pls_golite062009 |
| protein binding | 2.82801305666365 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.80824533696213 | bayes_pls_golite062009 |
| transcription activator activity | 2.80670414213103 | bayes_pls_golite062009 |
| protein heterodimerization activity | 1.87549895714075 | bayes_pls_golite062009 |
| protein dimerization activity | 1.4553301455216 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.12585390480455 | bayes_pls_golite062009 |
| transcription factor binding | 0.495155180229128 | bayes_pls_golite062009 |
