| Protein: | shl-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 609 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for shl-1.
| Description | E-value | Query Range |
Subject Range |
|
|
426.0 | [0..1] | [578..1] |
|
Region A: Residues: [1-417] |
1 11 21 31 41 51
| | | | | |
1 MASVAAWLPF ARAAAIGWVP ISRQPMPQAP VAIQAKDLAV DHVSDEKLAI NISGRRFETW 60
61 KNTLEKFPET LLGSNEKEFF YDEDTGEYFF DRDPDIFRHI LTFYRTGKLH YPRHECLVAY 120
121 DEELSFFGIM PDLISDCCYE DYKDKKRENQ ERLQEERVEN ADISTLKLSL KEKMWAAFEN 180
181 PHTTSIALVF YYVIGFFIAV SVMCNIVETI PCGYEDNVSV TCGEAYEEQF FVIDTACVII 240
241 FTIEYFLRLI SAPDRIKFMR SIMSVIDVIA IMPYYVSLVL TDNKDVSGLF VTLRVFRVFR 300
301 IFKFSRHSQG LRILGYTLKS CASELGFLVF SLAMAIIIFA TIMYYAEKKV DATRFTSIPS 360
361 AFWYTIVTLT TLGYGDMVPS TIMGKIVGGV CSLSGVLVIA LPVPVIVSNF SRIYHQN
|
| Detection Method: |  |
| Confidence: | 77.39794 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [418-609] |
1 11 21 31 41 51
| | | | | |
1 QRADKRKAQK KARLARIRIV KNASGLALFN KKRAHEARML AFEQGHLSFD ALRDEDIFEI 60
61 QHHHLLQCLE KATEREFVES EVMFEGGRNT PPPSETASLK GKTKRKRRLC CVSKENEEME 120
121 ELDRETRVTF NQNMDQICEL PKPDEMELNH RNNDKICVSQ LWKYKIEVKL TFYVQFFFFQ 180
181 FSRSVDKVLF IF
|
| Detection Method: | |
| Confidence: | 8.39794 |
| Match: | 1p7bA |
| Description: | Inward rectifier potassium channel Kirbac1.1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| potassium channel activity | 11.7251017123146 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 11.6633540248684 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 10.8390941878925 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 10.6070925040712 | bayes_pls_golite062009 |
| voltage-gated channel activity | 10.5829074022385 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 9.5007353467592 | bayes_pls_golite062009 |
| cation channel activity | 9.28297361124708 | bayes_pls_golite062009 |
| ion channel activity | 8.57431827568433 | bayes_pls_golite062009 |
| gated channel activity | 8.43134896985477 | bayes_pls_golite062009 |
| channel activity | 8.342756944087 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 8.342756944087 | bayes_pls_golite062009 |
| substrate-specific channel activity | 8.33787087080341 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 6.95707999757678 | bayes_pls_golite062009 |
| ligand-gated channel activity | 6.95707999757678 | bayes_pls_golite062009 |
| inward rectifier potassium channel activity | 6.12117505063719 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 4.76120513730507 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 4.65789393289521 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 4.23730629384621 | bayes_pls_golite062009 |
| G-protein activated inward rectifier potassium channel activity | 3.55541781989473 | bayes_pls_golite062009 |
| ATP-activated inward rectifier potassium channel activity | 3.06706619839151 | bayes_pls_golite062009 |
| transporter activity | 2.46466249895824 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.37642404692102 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.37262306131842 | bayes_pls_golite062009 |
| binding | 1.77589663168522 | bayes_pls_golite062009 |
| protein binding | 1.18387449987737 | bayes_pls_golite062009 |
