| Protein: | clp-7 |
| Organism: | Caenorhabditis elegans |
| Length: | 778 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clp-7.
| Description | E-value | Query Range |
Subject Range |
|
|
640.0 | [0..1] | [775..1] |
|
Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MSDEEEYYEE DGGNDQGGED YNDDYGGGGG GGGGGYDDQN QFQEQDYGNE QNYGNQDYGQ 60
61 GYGNQQDYGN QQDYQQQNYG GGGYDDEYQQ QDYQGGYDDS EQYEEQEEAE PE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [113-281] |
1 11 21 31 41 51
| | | | | |
1 PEEQEDYSND VEHSEEEEEE DDDDDGYTQA AANTNYGEND GGNNENHGMG SLIKGAMDGF 60
61 GGGGFDGVVG QIGSLISQGG GGDSSGGLTN VFSSGGMESI VGNLISSATH QFFGINPATG 120
121 AIIGAIAGNI IFQMGGQNNS LSSIGKVVLD NIISGKFKRD VQPFTPGGG
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [282-778] |
1 11 21 31 41 51
| | | | | |
1 GGPGIGFQQQ FQTINFQQER QRCLDQRCLF EDPQFPANDS SLYYKTRPDE PIIWKRPGEI 60
61 YENPQLIVGE KSRFDVKQGA LGDCWLLAAV ANLTLRDELF YRVVPPDQSF TENYAGIFHF 120
121 QFWRYGQWVD VVIDDRLPTV DGRLCYMRSQ ENNEFWSALL EKAYAKLYGG YENLDGGSTA 180
181 EALEDFTGGL TEFFDISKGD KSTTLAMLVR GMQMGSLFGC SIDADENVKE AQLTNGLVRG 240
241 HAYSITAIQT VNTYGGQVPL LRIRNPWGNS KEWNGAWSDG SSEWSQVDPQ QREQMGVQFA 300
301 KDGEFWMSFD DFMTNFTQME CCNLSADVMD EISEMTGVEV HDKQKHQWVE KSEDGEWNSR 360
361 QGTAGGCQNN DTYCNNPQYG TYFQVPMDSV EHDGKCTVIG AVLQKYRREL RTKGLDNLPI 420
421 GFSVYKADGS GQAIHDVSGQ KPIARTKVFI NMREVTVRFR VPPGQYVIVP CTFDAHDDAS 480
481 FLLRIFSNAE FQTTRLR
|
| Detection Method: | |
| Confidence: | 180.0 |
| Match: | 1kfuL |
| Description: | Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 3.28868056127375 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 3.05412701733177 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.01472402774099 | bayes_pls_golite062009 |
| hydrolase activity | 2.29464693834116 | bayes_pls_golite062009 |
| endopeptidase activity | 2.26699762664334 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| binding | 1.77258741259391 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.07520173658976 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| protein binding | 0.896934807256194 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.833714375875501 | bayes_pls_golite062009 |
| calcium ion binding | 0.687204894708051 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.495368836247989 | bayes_pls_golite062009 |
| nucleic acid binding | 0.313326619937245 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| DNA binding | 0.053663265361386 | bayes_pls_golite062009 |
