| Protein: | vab-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 455 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vab-3.
| Description | E-value | Query Range |
Subject Range |
|
|
258.0 | [0..2] | [385..18] |
|
Region A: Residues: [1-203] |
1 11 21 31 41 51
| | | | | |
1 MSDAGHTGVN QLGGVFVNGR PLPDATRQRI VDLAHKGCRP CDISRLLQVS NGCVSKILCR 60
61 YYESGTIRPR AIGGSKPRVA TSDVVEKIED YKRDQPSIFA WEIRDKLLAD NICNNETIPS 120
121 VSSINRVLRN LAAKKEQVTM QTELYDRIRI VDNFPYNSSW YGQWPIPMNG AVGLNPFVPA 180
181 PLIEPKTEGE FEKDEDQKPP TEP
|
| Detection Method: |  |
| Confidence: | 50.30103 |
| Match: | 1k78A |
| Description: | Pax-5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
|
Region A: Residues: [204-320] |
1 11 21 31 41 51
| | | | | |
1 EDDAAARMRL KRKLQRNRTS FTQVQIESLE KEFERTHYPD VFARERLAQK IQLPEARIQV 60
61 WFSNRRAKWR REEKMRNKRS SGTMDSSLSN GTPTPTPGSV TGSNMTNPIG SPASTPN
|
| Detection Method: | |
| Confidence: | 12.522879 |
| Match: | 2cueA |
| Description: | Solution structure of the homeobox domain of the human paired box protein Pax-6 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
|
Region A: Residues: [321-455] |
1 11 21 31 41 51
| | | | | |
1 RFPSNNSANL PTTNFVPQTS QMYAGLSQPA MDPYSFGIAN GFSMAPYPQV TDFQPHHMFQ 60
61 GRSPYDFPYP RMPTNGHGFQ QSMSPATTAV GDIPTLSSGM SLPVSAVLNS IDPSLTHSQM 120
121 HELSDLTQEH YWRPQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
