| Protein: | rpb-7 |
| Organism: | Caenorhabditis elegans |
| Length: | 197 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpb-7.
| Description | E-value | Query Range |
Subject Range |
|
|
168.0 | [0..3] | [191..534] |
|
Region A: Residues: [1-197] |
1 11 21 31 41 51
| | | | | |
1 MRQGRLLAHS SSRWHATGAL TLRMFFHLSL DHEVCLHPKY FGPNLNETIK MKLFNEVEGT 60
61 CTGKYGFVIA VTTIDTIGHG LIQPGRGFVI YPVRYKAIVF RPFKGQVVDG VVTQVNKVGI 120
121 FCDIGPLSCF ISRHCIPPDM EFDPNSEKPC YKTNDEANVI RNDDEIRVKL IGTRVDANDI 180
181 FAIGTLMDDF LGLCQAE
|
| Detection Method: |  |
| Confidence: | 35.69897 |
| Match: | 2c35B |
| Description: | Subunits Rpb4 and Rpb7 of human RNA polymerase II |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-directed RNA polymerase activity | 5.58573473432218 | bayes_pls_golite062009 |
| RNA polymerase activity | 5.58573473432218 | bayes_pls_golite062009 |
| structural constituent of ribosome | 5.1118741250402 | bayes_pls_golite062009 |
| structural molecule activity | 4.51553901145182 | bayes_pls_golite062009 |
| nucleic acid binding | 4.29626483284963 | bayes_pls_golite062009 |
| RNA binding | 3.99161318590718 | bayes_pls_golite062009 |
| ribonuclease activity | 3.83159232224897 | bayes_pls_golite062009 |
| DNA binding | 3.53568546959418 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 3.34659726705133 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| 2.80746531284205 | bayes_pls_golite062009 | |
| transferase activity, transferring phosphorus-containing groups | 2.58106651553389 | bayes_pls_golite062009 |
| exoribonuclease activity | 2.41262897171619 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 2.38378389593693 | bayes_pls_golite062009 |
| transcription regulator activity | 2.10110937001387 | bayes_pls_golite062009 |
| transferase activity | 2.03373182784225 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.81524862921454 | bayes_pls_golite062009 |
| mRNA binding | 1.660993824641 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.62996999055328 | bayes_pls_golite062009 |
| translation regulator activity | 1.46320772716954 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 1.40718318783582 | bayes_pls_golite062009 |
| translation initiation factor activity | 1.27539679024898 | bayes_pls_golite062009 |
| protein binding | 1.20309946451799 | bayes_pls_golite062009 |
| transcription activator activity | 1.09079153283893 | bayes_pls_golite062009 |
| transcription factor activity | 0.937752547283357 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.85691075793641 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.83268201349295 | bayes_pls_golite062009 |
| hydrolase activity | 0.724860465280978 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.583085644017496 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 0.474251377131502 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 0.47336621289748 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 0.47336621289748 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.223941674251642 | bayes_pls_golite062009 |
