| Protein: | pab-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 646 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pab-1.
| Description | E-value | Query Range |
Subject Range |
|
|
548.0 | [0..23] | [646..2] |
|
Region A: Residues: [1-211] |
1 11 21 31 41 51
| | | | | |
1 MEMNVAAPAA AVAGAAAPQP GQNQTGSSYT MASLYVGDLH PDVNESILFE KFSAAGPVLS 60
61 IRVCRDNATR LSLGYAYVNF QQPADAERAM DTMNFEALHG KPMRIMWSQR DPAMRRSGAG 120
121 NIFIKNLDKV IDNKSIYDTF SLFGNILSCK VAIDEDGFSK GYGFVHFETE EAAQNAIQKV 180
181 NGMLLAGKKV FVGKFQPRAQ RNRELGETAK Q
|
| Detection Method: |  |
| Confidence: | 58.221849 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| structural molecule activity | 1.56454315220334 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [212-307] |
1 11 21 31 41 51
| | | | | |
1 FTNVYVKNFG DHYNKETLEK LFAKFGNITS CEVMTVEGKS KGFGFVAFAN PEEAETAVQA 60
61 LHDSTIEGTD LKLHVCRAQK KSERHAELKK KHEQHK
|
| Detection Method: | |
| Confidence: | 8.522879 |
| Match: | 2disA |
| Description: | No description for 2disA was found. |
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| structural molecule activity | 1.56454315220334 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [308-394] |
1 11 21 31 41 51
| | | | | |
1 AERMQKYQGV NLYVKNLDET VDDDGLKKQF ESYGNITSAK VMTDENGRSK GFGFVCFEKP 60
61 EEATSAVTEM NSKMVCSKPL YVAIAQR
|
| Detection Method: | |
| Confidence: | 4.41 |
| Match: | 2f3jA |
| Description: | No description for 2f3jA was found. |
|
Region A: Residues: [395-504] |
1 11 21 31 41 51
| | | | | |
1 KEDRRAQLAS QYMQRLASMR MHGNVPGAAM YNPTQPGPGY YVANPMQQQR NFAGGQQMVR 60
61 PGGRWGMQNQ YPVQNQYMMA QGPGVYQNRM GRPQNQQGGP RGPPQQYNQV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [505-646] |
1 11 21 31 41 51
| | | | | |
1 AQGGVRMQGP PRTQNPGVQQ QNVPRPPQQQ QQQRPAPTGP KAPPQPYQAY QQRPQGIVIG 60
61 GQEPLTSAML AAAAPQEQKQ LLGERIYALI EKLYPGHKDA GKITGMMLEI DNSELIMMLQ 120
121 DSELFRSKVD EAASVLVSAQ KQ
|
| Detection Method: | |
| Confidence: | 33.39794 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.69788763665792 | bayes_pls_golite062009 |
| mRNA binding | 5.31297072316889 | bayes_pls_golite062009 |
| single-stranded RNA binding | 4.51056428709072 | bayes_pls_golite062009 |
| nucleic acid binding | 3.78909647605682 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 3.4111148675327 | bayes_pls_golite062009 |
| binding | 2.76167454154417 | bayes_pls_golite062009 |
| poly(A) RNA binding | 2.66269581586161 | bayes_pls_golite062009 |
| poly-purine tract binding | 2.20136693536924 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.19350242454642 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.14692713780316 | bayes_pls_golite062009 |
| protein binding | 0.856075580719879 | bayes_pls_golite062009 |
| catalytic activity | 0.287695754348243 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.223805219849164 | bayes_pls_golite062009 |
