| Protein: | CE20297 |
| Organism: | Caenorhabditis elegans |
| Length: | 404 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20297.
| Description | E-value | Query Range |
Subject Range |
|
|
441.0 | [0..1] | [404..1] |
|
Region A: Residues: [1-60] |
1 11 21 31 41 51
| | | | | |
1 MGKHEKGSSK DLANRTKSKG LQKLKFFCQM CQKQCRDANG FKCHLTSEAH QRQLLLFAEN 60
61
|
| Detection Method: |  |
| Confidence: | 1.25 |
| Match: | 1zu1A |
| Description: | Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.3313734687716 | bayes_pls_golite062009 |
| DNA binding | 3.15523680513517 | bayes_pls_golite062009 |
| transcription regulator activity | 3.13450410278168 | bayes_pls_golite062009 |
| binding | 2.79894364685962 | bayes_pls_golite062009 |
| transcription factor activity | 2.20435466497656 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.75169697620651 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.44934603674695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.39128012329158 | bayes_pls_golite062009 |
| transcription activator activity | 1.29160378137114 | bayes_pls_golite062009 |
| protein binding | 0.852654490075478 | bayes_pls_golite062009 |
| transcription repressor activity | 0.772384703325109 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.628218277487796 | bayes_pls_golite062009 |
| transcription factor binding | 0.565898381175308 | bayes_pls_golite062009 |
| chromatin binding | 0.530600410029043 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.0453997626048568 | bayes_pls_golite062009 |
|
Region A: Residues: [61-134] |
1 11 21 31 41 51
| | | | | |
1 SNSYLRQFSN DFEKNFMQLL RTSYGTKRVR ANEVYNAFIK DKGHVHMNST VWHSLTGFVQ 60
61 YLGSSGKCKI DEGD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [135-347] |
1 11 21 31 41 51
| | | | | |
1 KGWYIAYIDQ EALIRKEEDQ RKQQQEKDDE ERHMQIMDGM VQRGKELAGD DEHEYEATEL 60
61 IRDTPDQKIQ LDLNLGILDR KLDVKSGVAS AKISIFDMPK VKKEDPDEPG PSQPSRKSGK 120
121 KRSRSRSPAA KKFSKKSALD EIKEMEERKK ERKNRKDYWM REGIVVKVIT KSLGSEYYKA 180
181 KGVVRKVVDD YTAQVKLDDG TVVKLDQEHV ETV
|
| Detection Method: | |
| Confidence: | 4.154902 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [348-404] |
1 11 21 31 41 51
| | | | | |
1 IPSLGRQMMI VNGAYRGQEA TLESIDEKRF SLRLKIASGP TRGRQIDVPY EDASKLA
|
| Detection Method: | |
| Confidence: | 29.522879 |
| Match: | 2ckkA |
| Description: | No description for 2ckkA was found. |
