| Protein: | tra-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 648 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tra-3.
| Description | E-value | Query Range |
Subject Range |
|
|
526.0 | [0..1] | [648..28] |
|
Region A: Residues: [1-648] |
1 11 21 31 41 51
| | | | | |
1 MTRSEKTRHF GNQNYEKLRK ICIKKKQPFV DTLFPPTNQS LFLEQRQSSD IVWKRPGELH 60
61 PDPHLFVEGA SPNDVTQGIL GNCWFVSACS ALTHNFKLLA QVIPDADDQE WSTKHAYAGI 120
121 FRFRFWRFGK WVEVVIDDLL PTRDGKLLFA RSKTPNEFWS ALLEKAFAKL YGCYENLVGG 180
181 HLSDALQDVS GGVAETLHVR KFLKDDPNDT ELKLFNDLKT AFDKGALVVA AIAARTKEEI 240
241 EESLDCGLVK GHAYAVSAVC TIDVTNPNER SFTSFIMGSK RKQNLIRLQN PWGEKEWNGA 300
301 WSDDSPEWQN VSASQLSTMG VQPANSDSDD GDFWMPWESF VHYFTDISLC QLFNTSVFSF 360
361 SRSYDEQIVF SEWTTNGKKS GAPDDRAGGC HNFKATFCNN PQYIFDIPSP NCSVMFALIQ 420
421 NDPSEGLKKR EPFVTIGMHV MKVENNRQYR VHTAMHPIAI SDYASGRSVY LHLQSLPRGR 480
481 YLLIPTTFAP KEQTLFMLRV YSDEHIHFSP LTKHAPKLGL LKCKSAQSVT RLTIHGVDFN 540
541 SASTGTHNVY AILKDSRKSF RTKTLSGVKS IQWDEQFLFH KSKNRQQYKI EVWEDRKMAR 600
601 DHLLAQSVII ALIDNENRDT TLQLTDPRGT VIGTVSVTVS AFDDPMYL
|
| Detection Method: |  |
| Confidence: | 148.0 |
| Match: | 1kfuL |
| Description: | Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 3.19059336788201 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 3.05412701733177 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 2.93596559605971 | bayes_pls_golite062009 |
| endopeptidase activity | 2.91734319991078 | bayes_pls_golite062009 |
| hydrolase activity | 2.43328552376748 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| protein binding | 1.92445772322782 | bayes_pls_golite062009 |
| binding | 1.92046698500094 | bayes_pls_golite062009 |
| structural constituent of muscle | 1.30577051923353 | bayes_pls_golite062009 |
| transporter activity | 1.21845572420504 | bayes_pls_golite062009 |
| actin binding | 1.1967948958876 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.19670958990587 | bayes_pls_golite062009 |
| signal transducer activity | 1.11706264292297 | bayes_pls_golite062009 |
| molecular transducer activity | 1.11706264292297 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.07520173658976 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.00091316610003 | bayes_pls_golite062009 |
| calcium ion binding | 0.687204894708051 | bayes_pls_golite062009 |
| motor activity | 0.68020805045422 | bayes_pls_golite062009 |
| microfilament motor activity | 0.515693296786409 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.495368836247989 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.484449686814032 | bayes_pls_golite062009 |
| transcription regulator activity | 0.354062437867002 | bayes_pls_golite062009 |
| nucleic acid binding | 0.313326619937245 | bayes_pls_golite062009 |
| DNA binding | 0.306964954191276 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.246369226539662 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.193338880082314 | bayes_pls_golite062009 |
| tubulin binding | 0.11107511867058 | bayes_pls_golite062009 |
| protein complex binding | 0.0676093357928913 | bayes_pls_golite062009 |
