| Protein: | CE05540 |
| Organism: | Caenorhabditis elegans |
| Length: | 755 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05540.
| Description | E-value | Query Range |
Subject Range |
|
|
251.0 | [0..1] | [755..1] |
|
Region A: Residues: [1-165] |
1 11 21 31 41 51
| | | | | |
1 MVRVIIKGGV WKNTEDEILK AAIMKYGKNQ WSRIASLLHR KSAKQCKARW FEWLDPGIKK 60
61 TEWSREEDEK LLHLAKLMPT QWRTIAPIVG RTSAQCLERY EHLLDEAQRK AEGLDEEATE 120
121 TRKLKPGEID PTPETKPARP DPIDMDDDEL EMLSEARARL ANTQG
|
| Detection Method: |  |
| Confidence: | 27.39794 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| RNA binding | 2.55617811004485 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.810065362108106 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [166-331] |
1 11 21 31 41 51
| | | | | |
1 KKAKRKARER QLSDARRLAS LQKRREMRAA GLAFARKFKP KRNQIDYSEE IPFEKHVPAG 60
61 FHNPSEDRYV VEDANQKAIE DHQKPRGREI EMEMRREDRE KLKKRKEQGE ADAVFNIKEK 120
121 KRSKLVLPEP QISDRELEQI VKIGHASDSV RQYIDGTATS GLLTDY
|
| Detection Method: | |
| Confidence: | 1.05 |
| Match: | 1rh1A |
| Description: | crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [332-418] |
1 11 21 31 41 51
| | | | | |
1 TESARANAVA ARTMRTPMLK DTVQLELENL MALQNTESAL KGGLNTPLHE SELGKGVLPT 60
61 PKVAATPNTV LHAIAATPGT QSQFPGS
|
| Detection Method: | |
| Confidence: | 1.42 |
| Match: | 2fj7I |
| Description: | No description for 2fj7I was found. |
|
Region A: Residues: [419-755] |
1 11 21 31 41 51
| | | | | |
1 TPGGFATPAG SVAATPFRDQ MRINEEIAGS ALEQKASLKR ALASLPTPKN DFEVVGPDDD 60
61 EVEGAVEDES NQDEDGWIED ASERAENKAK RNAENRVRNM KMRSQVIQRS LPKPTKVNEQ 120
121 ATRATNSSAD DMVKAEMSKL LAWDVDNKPP SVIYSREELD AAADLIKQEA ESGPELNSLM 180
181 WKVVEQCTSE IILSKDKFTR IAILPREEQM KALNDEFQMY RGWMNQRAKR AAKVEKKLRV 240
241 KLGGYQAIHD KLCKKYQEVT TEIEMANIEK KTFERLGEHE LKAINKRVGR LQQEVTTQET 300
301 REKDLQKMYS KLSNKQWKLS QIEIHDAAST TSAPITY
|
| Detection Method: | |
| Confidence: | 21.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
