| Protein: | tbp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 340 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tbp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
362.0 | [0..41] | [340..18] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MNLNSPAVSM LGGDTPAHGG PNSVLGGQGP SSILTGHGPN SVMGPNSILG PGSVLNPQSI 60
61 QPMQSQQMHS LQGSSMQMHS HLANSNLNLN INPASVGPDR NPGSVMHHNL DIN
|
| Detection Method: |  |
| Confidence: | 3.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [114-340] |
1 11 21 31 41 51
| | | | | |
1 PPSVAYQNLT VPMTPLAYSV YDRDALTHQA PASNIAATMV PATPASQLDI PMPALQNIVS 60
61 TVNLGVQLDL KKIALHARNA EYNPKRFAAV IMRIREPRTT ALIFSSGKMV CTGAKSEEAS 120
121 RLAARKYARI VQKLGFQAKF TEFMVQNMVG SCDVRFPIQL EGLCITHSQF STYEPELFPG 180
181 LIYRMVKPRV VLLIFVSGKV VITGAKTKRD IDEAFGQIYP ILKGFKK
|
| Detection Method: | |
| Confidence: | 88.69897 |
| Match: | 1rm1A |
| Description: | Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 10.1927670598446 | bayes_pls_golite062009 |
| RNA polymerase III transcription factor activity | 8.4318102330583 | bayes_pls_golite062009 |
| transcription regulator activity | 4.66773099672992 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.97397050058114 | bayes_pls_golite062009 |
| DNA binding | 3.93251147843671 | bayes_pls_golite062009 |
| nucleic acid binding | 3.82919607287537 | bayes_pls_golite062009 |
| RNA polymerase I transcription factor activity | 3.24777019705869 | bayes_pls_golite062009 |
| binding | 2.72886792846471 | bayes_pls_golite062009 |
| transcription factor activity | 2.38288562794802 | bayes_pls_golite062009 |
| protein binding | 1.96605926404517 | bayes_pls_golite062009 |
| transcription factor binding | 1.86204668268867 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.59579825271822 | bayes_pls_golite062009 |
| transcription activator activity | 1.5285505684695 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.16858275919592 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.312991469396539 | bayes_pls_golite062009 |
| chromatin binding | 0.107733889697044 | bayes_pls_golite062009 |
