| Protein: | ceh-20 |
| Organism: | Caenorhabditis elegans |
| Length: | 338 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ceh-20.
| Description | E-value | Query Range |
Subject Range |
|
|
219.0 | [0..1] | [336..1] |
|
Region A: Residues: [1-179] |
1 11 21 31 41 51
| | | | | |
1 MVGTHPANLS ELLDAVLKIN EQTLDDNDSA KKQELQCHPM RQALFDVLCE TKEKTVLTVR 60
61 NQVDETPEDP QLMRLDNMLV AEGVAGPDKG GSLGSDASGG DQADYRQKLH QIRVLYNEEL 120
121 RKYEEACNEF TQHVRSLLKD QSQVRPIAHK EIERMVYIIQ RKFNGIQVQL KQSTCEAVM
|
| Detection Method: |  |
| Confidence: | 11.39794 |
| Match: | 6paxA |
| Description: | Pax-6 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.19298379377617 | bayes_pls_golite062009 |
| DNA binding | 2.87605703911271 | bayes_pls_golite062009 |
| binding | 2.82931587763241 | bayes_pls_golite062009 |
| nucleic acid binding | 2.64432967912966 | bayes_pls_golite062009 |
| transcription factor activity | 2.42668242022822 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.01558895662904 | bayes_pls_golite062009 |
| transcription repressor activity | 1.96316398225504 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.77114246571754 | bayes_pls_golite062009 |
| transcription activator activity | 1.38536646126001 | bayes_pls_golite062009 |
| transcription factor binding | 1.1887755957055 | bayes_pls_golite062009 |
| protein binding | 0.730593483550931 | bayes_pls_golite062009 |
| chromatin binding | 0.680605031532259 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.57338514991304 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.233718578386381 | bayes_pls_golite062009 |
|
Region A: Residues: [180-338] |
1 11 21 31 41 51
| | | | | |
1 ILRSRFLDAR RKRRNFSKQA TEVLNEYFYG HLSNPYPSEE AKEDLARQCN ITVSQVSNWF 60
61 GNKRIRYKKN MAKAQEEASM YAAKKNAHVT LGGMAGNPYG MLPGAAAAAG LLNPYNPMNI 120
121 PGQDTLHMGM PPFDLSVYNP QLMAAAQYQQ QMDNADKNS
|
| Detection Method: | |
| Confidence: | 19.522879 |
| Match: | 1b72B |
| Description: | pbx1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.19298379377617 | bayes_pls_golite062009 |
| DNA binding | 2.87605703911271 | bayes_pls_golite062009 |
| binding | 2.82931587763241 | bayes_pls_golite062009 |
| nucleic acid binding | 2.64432967912966 | bayes_pls_golite062009 |
| transcription factor activity | 2.42668242022822 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.01558895662904 | bayes_pls_golite062009 |
| transcription repressor activity | 1.96316398225504 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.77114246571754 | bayes_pls_golite062009 |
| transcription activator activity | 1.38536646126001 | bayes_pls_golite062009 |
| transcription factor binding | 1.1887755957055 | bayes_pls_golite062009 |
| protein binding | 0.730593483550931 | bayes_pls_golite062009 |
| chromatin binding | 0.680605031532259 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.57338514991304 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.233718578386381 | bayes_pls_golite062009 |
