| Protein: | nhr-10 |
| Organism: | Caenorhabditis elegans |
| Length: | 395 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-10.
| Description | E-value | Query Range |
Subject Range |
|
|
283.0 | [0..3] | [391..49] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MTGGGPSSNN SSQPEEVCLV CSDISTGYHY GVPSCNGCKT FFRRTIMKNQ TFSCQFQGKC 60
61 PVDKSIRCAC RHCRFEKCLQ VGMDRNAIQQ NRDPIGYTKR TRRYPPIKKV EAS
|
| Detection Method: |  |
| Confidence: | 21.30103 |
| Match: | 1lo1A |
| Description: | Steroid hormone receptor Err2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
| DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
| nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| transcription activator activity | 2.9532663930699 | bayes_pls_golite062009 |
| transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.72967350701574 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.55186574506963 | bayes_pls_golite062009 |
| protein binding | 2.44501340584871 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.40923942043513 | bayes_pls_golite062009 |
| steroid hormone receptor binding | 2.19264900659739 | bayes_pls_golite062009 |
| androgen receptor binding | 1.92232680714675 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 1.91348392022358 | bayes_pls_golite062009 |
| transcription repressor activity | 1.88834375049208 | bayes_pls_golite062009 |
| hormone receptor binding | 1.8288193687002 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
| transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
| steroid hormone receptor activity | 1.28090460550476 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.26452462867497 | bayes_pls_golite062009 |
| transporter activity | 0.768214707487563 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.644659911825478 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.61572149323953 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.50876329665586 | bayes_pls_golite062009 |
| structural molecule activity | 0.441960874303873 | bayes_pls_golite062009 |
| receptor activity | 0.230063209127305 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.187612502757984 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
|
Region A: Residues: [114-395] |
1 11 21 31 41 51
| | | | | |
1 DECSPAMVSE NDRSEDNFLT LLSSTEQKCC ALRLAEYMPS RTLIEAVVSD CLLTDEVFMA 60
61 EHAILSPRHR VTSLRFANQS DYHYWHERDW FVMIEWAKTL PVFQSLPFTD KLALLRHSAI 120
121 TYPSLVHVFN SPDHGLDTIV FPDGAYFDRT PEPTRPLGFN KKKYQMLDQL LKPMRSMEID 180
181 MTEFAAFKAI FFLNPDADDV DSNAKKTLSD GRSAITNALY RYMVKKKGAE DAGDRFGRLL 240
241 LLGTVLATMA VEMKEAVLVA DFFDQIQFST FAKQLLFGIK TE
|
| Detection Method: | |
| Confidence: | 44.69897 |
| Match: | 1xiuA |
| Description: | Crystal structure of the agonist-bound ligand-binding domain of Biomphalaria glabrata RXR |
Matching Structure (courtesy of the PDB): |
|
