| Protein: | unc-86 |
| Organism: | Caenorhabditis elegans |
| Length: | 429 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
|
Region A: Residues: [1-184] |
1 11 21 31 41 51
| | | | | |
1 MEKAHRFRLP FCSFFPVPLL VSVLIFHHSA PFLIQLFFPS PLFNPLLRPS KISRGSENGA 60
61 CTSHSTLQRT RKIIQWELPK RGGDQDIGDP RPFRIHLSPP SFKVPLFSTD MQNTAPVPTT 120
121 TTASKMQPDF ILFIFSYSNY FSGIHDTSAA TNIYQGLPSS SEPFDASVVV PTSSDDQMTP 180
181 LQQV
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [185-429] |
1 11 21 31 41 51
| | | | | |
1 MAMQQSYGAP PPFQYNMTHP FSTTSIASSN NLARYPIAPP TSDMDTDPRQ LETFAEHFKQ 60
61 RRIKLGVTQA DVGKALAHLK MPGVGSLSQS TICRFESLTL SHNNMVALKP ILHSWLEKAE 120
121 EAMKQKDTIG DINGILPNTD KKRKRTSIAA PEKRELEQFF KQQPRPSGER IASIADRLDL 180
181 KKNVVRVWFC NQRQKQKRDF RSQFRARSAA AVMGPRVMPV LNGNNSNNNL KQGQTTYNGL 240
241 PGFFD
|
| Detection Method: | |
| Confidence: | 22.09691 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.51228466689923 | bayes_pls_golite062009 |
| nucleic acid binding | 5.37468811865033 | bayes_pls_golite062009 |
| transcription regulator activity | 5.05236457497789 | bayes_pls_golite062009 |
| transcription factor activity | 3.89464979825638 | bayes_pls_golite062009 |
| binding | 3.66501723413351 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.25218945600666 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22754992035091 | bayes_pls_golite062009 |
| transcription activator activity | 3.15886611325686 | bayes_pls_golite062009 |
| transcription repressor activity | 1.75958281319075 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.62096064323298 | bayes_pls_golite062009 |
| protein binding | 1.55649304400241 | bayes_pls_golite062009 |
| chromatin binding | 1.2739759748489 | bayes_pls_golite062009 |
| transcription factor binding | 1.02788976342343 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.92393807212912 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.8718993114781 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.81316180547536 | bayes_pls_golite062009 |
| promoter binding | 0.22765608166458 | bayes_pls_golite062009 |
| catalytic activity | 0.00446472034106909 | bayes_pls_golite062009 |
