| Protein: | SPBC1105.07c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 442 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1105.07c.
| Description | E-value | Query Range |
Subject Range |
|
|
335.0 | [0..1] | [417..4] |
|
|
333.0 | [0..1] | [417..4] |
|
|
331.0 | [0..14] | [411..27] |
|
|
330.0 | [0..14] | [411..28] |
|
|
330.0 | [0..14] | [411..30] |
|
|
330.0 | [0..14] | [411..30] |
|
Region A: Residues: [1-172] |
1 11 21 31 41 51
| | | | | |
1 MSLNDFLQTL SNAVGEKNSN TLEKCIILDP SEPSFQQLSK TLFLDRKGKN KLNGTIQKEF 60
61 GRIRGWKELV TTYFEYVENA ASSPDQRKWE LLQNLYSNLT TCFSHIDGAW LCTIVKRVSK 120
121 LYVKLSLQLD TSTPTLEDSF DGNGFIQRKY VSDASRNVLR TFNSILSDRQ QN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [173-316] |
1 11 21 31 41 51
| | | | | |
1 INPSKKDAIF CIANLLCLLY FRLKQIRLCQ TIQANVISSG ADISRATMAE LVTFRYYLGR 60
61 CHLYQRKIHQ AKDHLLFSFL QCPDECYHQK RLSLIYLTTC LLILGKSPTK GLLEKYKLTA 120
121 AFEPLIKALK SGDIKSFRLS LEDN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [317-442] |
1 11 21 31 41 51
| | | | | |
1 SRRKWFIKRG IYLTLLDRCE IILWRNLFRK VFLFTFEQSQ KTPHVSGSYL LTAARLSTND 60
61 NSYDMDDVEC ICVSLIDQGY IKGYIIHASS TLVLKKDPSF GFSVIESLMP IARNDHAEKE 120
121 FFHANA
|
| Detection Method: | |
| Confidence: | 1.78 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.23858959608048 | bayes_pls_golite062009 |
| DNA binding | 4.54024488199476 | bayes_pls_golite062009 |
| nucleic acid binding | 4.30331577005505 | bayes_pls_golite062009 |
| binding | 3.89976494610525 | bayes_pls_golite062009 |
| transcription factor activity | 3.82269332595313 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.41045867230388 | bayes_pls_golite062009 |
| transcription activator activity | 2.13702350917359 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.12567455635303 | bayes_pls_golite062009 |
| transcription repressor activity | 1.9708626903609 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.28654223481433 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.19572229887868 | bayes_pls_golite062009 |
| RNA binding | 0.999156053511857 | bayes_pls_golite062009 |
| transcription factor binding | 0.752335897765285 | bayes_pls_golite062009 |
| protein binding | 0.749376520208656 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.490809930581315 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.300710367763552 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.171423850692861 | bayes_pls_golite062009 |
