| Protein: | trf1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 485 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trf1.
| Description | E-value | Query Range |
Subject Range |
|
|
458.0 | [0..89] | [485..28] |
|
|
434.0 | [0..93] | [484..40] |
|
|
421.0 | [0..89] | [480..306] |
|
|
401.0 | [0..22] | [430..281] |
|
|
357.0 | [0..85] | [485..335] |
|
|
354.0 | [0..14] | [316..171] |
|
|
342.0 | [0..7] | [319..50] |
|
|
330.0 | [0..92] | [484..141] |
|
Region A: Residues: [1-300] |
1 11 21 31 41 51
| | | | | |
1 MSKRSLDPSD DFKGQKRLAI DPESTALEQD RQMLQQLSEQ NSELEPQNVA PNAEIPLGFD 60
61 LSGIQFNMTP DFYLRMNQGM DYAFNQPNPI ATPQQLLRTS LIPTLGNLSN IILSILGKPV 120
121 QEASAIVTNP ASEMGMAFTK VMNMFRMVKD IYTEESFIYS SAIGMRTPSQ RSTTRRANLA 180
181 IFLAAVYGAL QIGFFHLNEN FLEVFAPDES NILTNQGTLY MELKTQAYIS AMAQAERPKG 240
241 DILNDLFPSD MAHRFLIRRN AKLDDKLTYV EKQIIEKCTA RKERLANFSP QEALNEVYPW 300
301
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [301-381] |
1 11 21 31 41 51
| | | | | |
1 GKFLSEIACY IHNNYSSISA IPIPANSFKR RSKKNGLRFK AGEAESSPSE SGSDLTDSLA 60
61 FGIPSSTFDG SSETQNVSSV V
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [382-485] |
1 11 21 31 41 51
| | | | | |
1 LYDQVRHMTN NNLNNKRTRR VANRRSWTKE EEEALLDGLD LVKGPRWSQI LELYGPGGKK 60
61 SEVLKYRNQV QLKDKARNMK LFFLKSGQVV PAALQCVTGD LRRD
|
| Detection Method: | |
| Confidence: | 6.69897 |
| Match: | 1iv6A |
| Description: | DNA-binding domain of human telomeric protein, hTRF1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| telomeric DNA binding | 2.54876676195978 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.666799964992178 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.529774583092406 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.236060274498333 | bayes_pls_golite062009 |
| DNA helicase activity | 0.187022204923867 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.105174598157041 | bayes_pls_golite062009 |
| histone binding | 0.0391625783266718 | bayes_pls_golite062009 |
