YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC622.13c
Organism:	Schizosaccharomyces pombe
Length:	1098 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC622.13c.

Description	E-value	Query Range	Subject Range
gi\|85087048 - gi\|85087048\|ref\|XP_957816.1\| hypothetical protein NCU00345 [Neurospora crassa OR74A] gi\|28918911, gi\|... - gi\|32403636\|ref\|XP_322431.1\| hypothetical protein [Neurospora crassa], gi\|28918911\|gb\|EAA28580.1\| pr...	884.0	[0..4]	[922..12]
TTI1_YEAST - TEL2-interacting protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TTI1 PE=1 SV=... TTI1 - Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin re...	858.0	[0..1]	[981..1]
gi\|42552274, gi\|... - gi\|46122391\|ref\|XP_385749.1\| hypothetical protein FG05573.1 [Gibberella zeae PH-1], gi\|42552274\|gb\|E...	854.0	[0..4]	[925..10]
gi\|49097490, gi\|... - gi\|67539796\|ref\|XP_663672.1\| hypothetical protein AN6068.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	837.0	[0..2]	[988..3]
gi\|39953807, gi\|... - gi\|39953807\|ref\|XP_364018.1\| hypothetical protein MG08863.4 [Magnaporthe grisea 70-15], gb\|EAA46520....	782.0	[0..2]	[925..11]
gi\|44985788 - gi\|44985788\|gb\|AAS54412.1\| AGL078Wp [Ashbya gossypii ATCC 10895] gi\|45201018, gi\|... - gi\|45201018\|ref\|NP_986588.1\| AGL078Wp [Ashbya gossypii ATCC 10895], gi\|44985788\|gb\|AAS54412.1\| AGL07...	714.0	[0..3]	[921..11]
gi\|30699400 - gi\|30699400\|ref\|NP_178040.2\| binding [Arabidopsis thaliana]	708.0	[0..4]	[941..22]
CG16908-PA - This gene is referred to in FlyBase by the symbol Dmel\CG16908 (CG16908, FBgn0037741). It is a prote...	636.0	[0..127]	[920..114]
gi\|115443384, gi... - gi\|115443384\|ref\|XP_001218499.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	618.0	[0..11]	[969..48]
gi\|169783826 - gi\|169783826\|ref\|XP_001826375.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775119 - gi\|83775119\|dbj\|BAE65242.1\| unnamed protein product [Aspergillus oryzae]	604.0	[0..3]	[944..4]

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Predicted Domain #1

Region A:
Residues: [1-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHIQSIFAQ IRDPFRKLSF YSLPLSSETS SVDSNGLKNS LKDAYFGLEK ALTNTDADLP  60
   61 LNLCDYIFFP IVPVLKSWYR VPSTGVEYAI QCVNLLYKHG WREAHNEMLT MQLLLMLLNI 120
  121 ADGWKSPSET VEQDFRVREI TFETLENVIT DFKPNFHDKR QYLLFARALS SALDIIPNKN 180
  181 SSRRLQFASL CCVQKLICPK QYRLPTEFLT TFLPGIVSGL TKGLAPNGTC QYFKNVCISL 240
  241 NILGDTVVKA ISDDNTKDLP DEKDASSNSH FFGPTKRTKS WKRATCQQLS NAVKAILHLR 300
  301 SSQNLHVQDA LFDFCFILFR DCLDSLKDCR IHLLESMLKL INKKENPKLR DYGMNKLVSL 360
  361 IESFNNITME SVLTECLNDW ST

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.84
Match:	2ie3A
Description:	No description for 2ie3A was found.

Predicted Domain #2

Region A:
Residues: [383-1098]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TWSSVSTFAS EDNKLEELNR LKSLLSISSH LPKTLQLMEP LLDGILSQLV PKSSGIDSNS  60
   61 QKLLTSSTSN EYIHGEFFGG NEMERTTQEI VTSFAKAPNV KYVMQSLLSK ATSATNENSV 120
  121 RAFWAFMVLL KSDVETVDSL EMYIDSLEQY SFEVLQQLSQ LNVFTKASLE DKQKKEKYNL 180
  181 LCVRSCIAID SISWISSLQG VKFRSKLMAY FYPLLEHLAF ASPYVSSFAE ACIQAIATNC 240
  241 NYSTPAELLR ENIDYVVNSV ALKLNTLDVS PQLPIVMAYV IKNDDGGCIR YIGDVVDAIF 300
  301 GILDAYHGYA RLTEGLLGIL YAIIKQESIN GEEKKLIVGV EEDAMNEDKN KPCKKIREFV 360
  361 QLLLENPNYP LPKDDHELED MIHDEQQETK SGHEQFREHA MKEKEKKGKE NENMGETTVD 420
  421 HENINSNVMD EQGEKQKDDV VDMVRKITEK AQLFLSHEQI TIRVEMLKLL SYGSNVLAKE 480
  481 PNTFYPAINT FWPLVVIQLD TDNELLVECA LETIYQVCAL ADDFMTSRIR QDLLPRLETL 540
  541 CQRWHLFNVA RTYSSEHRLQ RAMLKVTSAC VANKLSIVVY LKLMGITAPI IRAITHMSQK 600
  601 YAGDESLVEE TWNAFSKQNP DAVYYEREVR GSQMIDTFST ELLIPGKQRV QRTYRRTHEV 660
  661 LEPVGAKTSE TVFNDLLGQQ GSGKTETQEE PLPSLDNLLH LNQPKKGAKK PLISII

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.19
Match:	1gw5B
Description:	Adaptin beta subunit N-terminal fragment
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.81296846555705	bayes_pls_golite062009
protein binding	1.81870125631028	bayes_pls_golite062009
cytoskeletal protein binding	0.66737572008694	bayes_pls_golite062009
transcription factor binding	0.599256242877486	bayes_pls_golite062009
transcription coactivator activity	0.236599077019148	bayes_pls_golite062009
nucleic acid binding	0.118461769548431	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: