YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPCC622.13c

General Information:
Name(s) found: SPCC622.13c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • conserved eukaryotic protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1098 amino acids

    Gene Ontology:
    Cellular Component: ASTRA complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [IPILink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHIQSIFAQ IRDPFRKLSF YSLPLSSETS SVDSNGLKNS LKDAYFGLEK ALTNTDADLP  60
   61 LNLCDYIFFP IVPVLKSWYR VPSTGVEYAI QCVNLLYKHG WREAHNEMLT MQLLLMLLNI 120
  121 ADGWKSPSET VEQDFRVREI TFETLENVIT DFKPNFHDKR QYLLFARALS SALDIIPNKN 180
  181 SSRRLQFASL CCVQKLICPK QYRLPTEFLT TFLPGIVSGL TKGLAPNGTC QYFKNVCISL 240
  241 NILGDTVVKA ISDDNTKDLP DEKDASSNSH FFGPTKRTKS WKRATCQQLS NAVKAILHLR 300
  301 SSQNLHVQDA LFDFCFILFR DCLDSLKDCR IHLLESMLKL INKKENPKLR DYGMNKLVSL 360
  361 IESFNNITME SVLTECLNDW STTWSSVSTF ASEDNKLEEL NRLKSLLSIS SHLPKTLQLM 420
  421 EPLLDGILSQ LVPKSSGIDS NSQKLLTSST SNEYIHGEFF GGNEMERTTQ EIVTSFAKAP 480
  481 NVKYVMQSLL SKATSATNEN SVRAFWAFMV LLKSDVETVD SLEMYIDSLE QYSFEVLQQL 540
  541 SQLNVFTKAS LEDKQKKEKY NLLCVRSCIA IDSISWISSL QGVKFRSKLM AYFYPLLEHL 600
  601 AFASPYVSSF AEACIQAIAT NCNYSTPAEL LRENIDYVVN SVALKLNTLD VSPQLPIVMA 660
  661 YVIKNDDGGC IRYIGDVVDA IFGILDAYHG YARLTEGLLG ILYAIIKQES INGEEKKLIV 720
  721 GVEEDAMNED KNKPCKKIRE FVQLLLENPN YPLPKDDHEL EDMIHDEQQE TKSGHEQFRE 780
  781 HAMKEKEKKG KENENMGETT VDHENINSNV MDEQGEKQKD DVVDMVRKIT EKAQLFLSHE 840
  841 QITIRVEMLK LLSYGSNVLA KEPNTFYPAI NTFWPLVVIQ LDTDNELLVE CALETIYQVC 900
  901 ALADDFMTSR IRQDLLPRLE TLCQRWHLFN VARTYSSEHR LQRAMLKVTS ACVANKLSIV 960
  961 VYLKLMGITA PIIRAITHMS QKYAGDESLV EETWNAFSKQ NPDAVYYERE VRGSQMIDTF1020
 1021 STELLIPGKQ RVQRTYRRTH EVLEPVGAKT SETVFNDLLG QQGSGKTETQ EEPLPSLDNL1080
 1081 LHLNQPKKGA KKPLISII

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ste13 No Comments Unpublished Data
    View Run spc19 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..382] FFAS03 1.84 No description for 2ie3A was found.
    2 View Details [383..1098] FFAS03 1.19 Adaptin beta subunit N-terminal fragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.81296846555705 bayes_pls_golite062009
  • protein binding
    		•  1.81870125631028 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.66737572008694 bayes_pls_golite062009
  • transcription factor binding
    		•  0.599256242877486 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.236599077019148 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.118461769548431 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle