| Protein: | SPAC105.03c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 708 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC105.03c.
| Description | E-value | Query Range |
Subject Range |
|
|
280.0 | [0..110] | [696..8] |
|
|
254.0 | [0..76] | [699..4] |
|
|
252.0 | [0..69] | [703..17] |
|
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251.0 | [0..119] | [705..61] |
|
|
248.0 | [0..77] | [687..21] |
|
|
248.0 | [0..84] | [699..10] |
|
|
247.0 | [0..75] | [705..17] |
|
Region A: Residues: [1-85] |
1 11 21 31 41 51
| | | | | |
1 MDQSSSPSQP ESQAQPNLCI PCSLGTCLIH FHEFSSSSFM DPVSLFCSSP YPNLPPHSRS 60
61 SSLESKKPSV ASQDVKSDGT LPIGT
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.240 | 0.181 | regulation of transcription from RNA polymerase II promoter | d.15.1 | Ubiquitin-like |
| View | Download | 0.350 | 0.049 | specific RNA polymerase II transcription factor activity | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.226 | 0.016 | specific RNA polymerase II transcription factor activity | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.334 | 0.005 | specific RNA polymerase II transcription factor activity | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.327 | 0.005 | specific RNA polymerase II transcription factor activity | a.7.6 | Ribosomal protein S20 |
|
Region A: Residues: [86-262] |
1 11 21 31 41 51
| | | | | |
1 NNNPLIPSHS QESSHWTIRH ESMPSALAGS SAQSMQQFPS ITQNEENFRF KKSFTQPQPI 60
61 VKETTFPKSE PGQEHAKLSD LSYEEFLKKY SSTKVERVSE AAPPPSSLNS STVLDENDSL 120
121 ISQGSSVDDQ TDFLGFDDSL SYAYILNPTS DSDVDLIRQY FIPKEGTYTF SNMHIRY
|
| Detection Method: | |
| Confidence: | 2.13 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.70904317608141 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.08956709478484 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.67344049333457 | bayes_pls_golite062009 |
| transcription activator activity | 0.822069987038721 | bayes_pls_golite062009 |
|
Region A: Residues: [263-389] |
1 11 21 31 41 51
| | | | | |
1 VSANPKTPVM YMVDPAYEPH KQIARYEKLQ QIFQVVEATV SPEVGERLIG LYFRYIHRVY 60
61 PVIHGERFLL AFKKAKHKLS PILLTAMYAS SIIYWDADKE LRNYPRLDAK KLWDLTEDFL 120
121 DLSFSLS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.707 | a.74.1 | Cyclin-like |
| View | Download | 0.368 | a.1.1 | Globin-like |
| View | Download | 0.539 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.402 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.532 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
|
Region A: Residues: [390-604] |
1 11 21 31 41 51
| | | | | |
1 RLSTLQAAII FLTGRPWINV AGNWSILTRA IALAQILGFH LDCSEWQIPK EEKILRNRVW 60
61 WALFVNEKWL SMYIGINASI RQDDYLVPPL TDNQLLAGEQ RIADSFNVFV KMAELSILLQ 120
121 NVLQHLFNAR AVMTMSKNRR TVAQKISKYL ISLEEFSCSC NLRENQPGSL SLFLQIDALE 180
181 LLLRKTALKL KLTDAVYQQE MLNVVQRCVS HFLAI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [605-708] |
1 11 21 31 41 51
| | | | | |
1 NESHFTDFFW PYSQFYFCIL SSAIIKMYLD FEFNENFNAT TFGLLSSFTK HCVWLKFRNF 60
61 DLVFMAYKRL NALLIELSSG RPLIGKLLQE TFEHRKRNLD ETLT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
