| Protein: | rga6 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 733 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rga6.
| Description | E-value | Query Range |
Subject Range |
|
|
258.0 | [0..3] | [601..452] |
|
|
239.0 | [0..58] | [604..112] |
|
|
238.0 | [0..58] | [604..112] |
|
|
237.0 | [0..58] | [604..112] |
|
|
233.0 | [0..88] | [604..138] |
|
Region A: Residues: [1-182] |
1 11 21 31 41 51
| | | | | |
1 MTLNPSTLNN GTLGDLKEHK DVVLSSNAQT DEKRFEEPSL EVGGSLAKVE NGLSTSISSS 60
61 ASNLEGQQAP FFTKQNSCLS RFRELAQTYN IHEINLEEYV SQIKEVKQSL YSDDSVFNES 120
121 KSSSPPDAHT DKYFTPCGSP TKLIHSTLLE ERDTPSSLEH VSFYLQESAV SEVRFDKPSN 180
181 NG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.262 | a.74.1 | Cyclin-like |
| View | Download | 0.379 | a.23.3 | Methane monooxygenase hydrolase, gamma subunit |
|
Region A: Residues: [183-557] |
1 11 21 31 41 51
| | | | | |
1 PLGRSSLNLS SLSHELQTSQ DSPSLSATNQ LSSSDTLEPL QYPPSSFGSQ RQFNASQDSP 60
61 KRSPSKGSWS SILRRPSLTY SPKRQSTGLH RRSLTNYFKF PHRNAHQHNA IAHNPSVFGK 120
121 PIGDLTSDPT NLCKFTFPTP ECAPPSLLLP HIFAQCVHFL SLNALHVPGI FRISGSGPVI 180
181 KAITEYFYSP PHFWLDETSE IFKRIGFPSY IDIAAVLKRY IMLLPGGLFT HKDILNLLVP 240
241 LYVDSSRVKV PIDIRNEMAA LCFSQIDSYV RFSILCSLLA LLHQIATRTQ ELENGMENTK 300
301 DSTLMKPEAL GIIFGPLLLG NSSTDLSKSC PSGNVNDLMR FETEKARVEA KIVEGLIIHW 360
361 PEVLLKINSL DIPNC
|
| Detection Method: | |
| Confidence: | 49.0 |
| Match: | 1xa6A |
| Description: | Crystal Structure of the Human Beta2-Chimaerin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| Rho GTPase activator activity | 4.25739379139603 | bayes_pls_golite062009 |
| Rac GTPase activator activity | 4.16341873243208 | bayes_pls_golite062009 |
| GTPase regulator activity | 2.41361462392252 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 2.38885756088 | bayes_pls_golite062009 |
| binding | 1.8899231872471 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 1.79187892586384 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.70400915650397 | bayes_pls_golite062009 |
| small GTPase regulator activity | 1.65078918289568 | bayes_pls_golite062009 |
| protein binding | 1.03543141739589 | bayes_pls_golite062009 |
| Ras GTPase activator activity | 0.769564483290942 | bayes_pls_golite062009 |
| Ras guanyl-nucleotide exchange factor activity | 0.724386087400895 | bayes_pls_golite062009 |
| Rho guanyl-nucleotide exchange factor activity | 0.697083262102355 | bayes_pls_golite062009 |
| GTPase activator activity | 0.423342320468982 | bayes_pls_golite062009 |
| enzyme activator activity | 0.0257933085345788 | bayes_pls_golite062009 |
|
Region A: Residues: [558-733] |
1 11 21 31 41 51
| | | | | |
1 FSDVGLTDQV AIFTPAVPKE DSPEQIPENV NASEESYPNV KHISKLPLIN DSSDNESGNQ 60
61 ENDDAVANES TKVVVDNQQP QPKISTVSDT AVPSMSFANN ISSRSVISAA TDSKPSTRTS 120
121 PPFVNNTKPI VAKSPVTVTA SSETNKKSQK INKKASPRVS LWTKLFGKFR SNKKKS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
