YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC57A10.09c
Organism:	Schizosaccharomyces pombe
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC57A10.09c.

Description	E-value	Query Range	Subject Range
gi\|54636041, gi\|... - gi\|54636041\|gb\|EAL25444.1\| GA15918-PA [Drosophila pseudoobscura], gi\|125808777\|ref\|XP_001360869.1\| G...	127.0	[0..6]	[104..109]
gi\|108871822, gi... - gi\|157130629\|ref\|XP_001655745.1\| hypothetical protein AaeL_AAEL011831 [Aedes aegypti], gi\|108871822\|...	126.0	[0..9]	[94..129]
Sox14-PB, Sox14-... - The gene Sox box protein 14 is referred to in FlyBase by the symbol Dmel\Sox14 (CG3090, FBgn0005612)...	125.0	[0..6]	[104..177]
SRY_HORSE - Sex-determining region Y protein OS=Equus caballus GN=SRY PE=2 SV=2	125.0	[0..5]	[105..43]
gi\|74315425, gi\|... - gi\|74315425\|gb\|ABA02363.1\| sox family protein B1 [Nematostella vectensis], gi\|156383753\|ref\|XP_00163...	124.0	[0..4]	[98..21]
gi\|47217009 - gi\|47217009\|emb\|CAG01637.1\| unnamed protein product [Tetraodon nigroviridis]	124.0	[0..1]	[108..92]
gi\|110748902 - gi\|110748902\|ref\|XP_001122045.1\| PREDICTED: similar to Putative transcription factor SOX-15 (Sox50E)...	124.0	[0..3]	[107..150]
gi\|33415946 - gi\|33415946\|gb\|AAQ18510.1\| transcription factor Sox10b [Takifugu rubripes]	123.0	[0..1]	[108..92]
gi\|73990608 - gi\|73990608\|ref\|XP_542802.2\| PREDICTED: similar to SRY-box 14 [Canis familiaris]	123.0	[0..11]	[99..341]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRAAKSSRK KDPNTPKRNM SAFMFFSIEN REKMKTDNPD ATFGQLGSLL GKRWKELTST  60
   61 EREPYEEKAR QDKERYERER KEYDTKLANG EKTGKASAPA AAAAAKEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	2gzkA
Description:	No description for 2gzkA was found.

Predicted functions:

Term	Confidence	Notes
DNA binding	5.15324651287773	bayes_pls_golite062009
nucleic acid binding	5.01228762819617	bayes_pls_golite062009
transcription regulator activity	4.9607192917135	bayes_pls_golite062009
sequence-specific DNA binding	4.06355503548774	bayes_pls_golite062009
transcription factor activity	3.82658263870186	bayes_pls_golite062009
binding	3.6211482127468	bayes_pls_golite062009
transcription activator activity	2.95665802871704	bayes_pls_golite062009
RNA polymerase II transcription factor activity	2.75319687398598	bayes_pls_golite062009
protein binding	2.18211240370246	bayes_pls_golite062009
chromatin binding	1.64428658020027	bayes_pls_golite062009
transcription repressor activity	1.53825678633232	bayes_pls_golite062009
transcription factor binding	1.10315330167937	bayes_pls_golite062009
DNA bending activity	0.87985209274756	bayes_pls_golite062009
crossed form four-way junction DNA binding	0.293183929205961	bayes_pls_golite062009
bent DNA binding	0.293183929205961	bayes_pls_golite062009
open form four-way junction DNA binding	0.293183929205961	bayes_pls_golite062009
RNA polymerase II transcription factor activity, enhancer binding	0.261169200304829	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: