| Protein: | iki3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1253 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for iki3.
| Description | E-value | Query Range |
Subject Range |
|
|
983.0 | [0..1] | [1223..1] |
|
|
969.0 | [0..1] | [1220..1] |
|
|
967.0 | [0..1] | [1235..1] |
|
|
950.0 | [0..1] | [1222..1] |
|
|
947.0 | [0..1] | [1222..1] |
|
Region A: Residues: [1-621] |
1 11 21 31 41 51
| | | | | |
1 MKNLVTHLHH VFPNVNGSIK ALAFNSISDK IYVVCGLDNE NPGIEIYEIS ENDDVSKLVE 60
61 FDSPSFVSDN GDIDEIQSMQ FLGEPMAICL SLKGGDIVMV KVDPSPEEAP WEIIGNVENG 120
121 IVASCWSTDE QVFCIITGGD TILFMTKNFD IISETSLSDA DLNEFNKHIS VGWGRSETQF 180
181 RGKRVRAKLR DPTLPEKIDE GKLSDVDDGK TYICWRGDSQ YVSINRLEKG PRRAIRVYSR 240
241 EGLLDSISEP QDGQQSLLSW KPSGSVLATI KSDSSDNSSK VIFFERNGLR HGEFSLRRRE 300
301 DEKYTGLAWN VSSSILAVST ENSVMLWTTG NYHWYLKKEI NIPQNALISW HPEHANTLYI 360
361 TGKNHIEKVV FDLKYVTEFS TSPNDFGLIP VIDGSSLLVT PLSLCNIPPP MCRYKLSLDY 420
421 NVQMTSINAT SDMLFAADDR RLTAFTFNSQ EDIAKFGEFD ISTYAEGLNF KSLLGLSGNQ 480
481 VLLLADGTNN CSKFFVFQCD EDNESLKLLA SESFESCILN ASYCSEMLFF QTSSGKLISY 540
541 NLNVKSIESI SLSFPKPCSD FVVVPVHETF VPIGLTSYGR LYAEQRLLST GVLSFFCTER 600
601 FVLFTTTKNL LKFVHLVSTV D
|
| Detection Method: |  |
| Confidence: | 41.0 |
| Match: | 1pguA |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| snoRNA binding | 3.21038659166441 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.99343906593123 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| 2.40807791198019 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.5281054405163 | bayes_pls_golite062009 |
| kinase activity | 1.5053563627859 | bayes_pls_golite062009 |
| RNA binding | 1.50295916950465 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.33036729957356 | bayes_pls_golite062009 |
| protein kinase activity | 1.3214585007945 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| ligase activity | 0.93058496790047 | bayes_pls_golite062009 |
| transferase activity | 0.913674310517261 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.722742354759599 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.676924760416604 | bayes_pls_golite062009 |
| transcription repressor activity | 0.658573452658359 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.618638900707402 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.28606552120995 | bayes_pls_golite062009 |
| transcription initiation factor activity | 0.262596110845942 | bayes_pls_golite062009 |
| structural molecule activity | 0.254012051644049 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.182612389752591 | bayes_pls_golite062009 |
| chromatin binding | 0.151977098745772 | bayes_pls_golite062009 |
| actin binding | 0.00606924241186668 | bayes_pls_golite062009 |
|
Region A: Residues: [622-755] |
1 11 21 31 41 51
| | | | | |
1 DLQVVEDDAV DRHDERCRVV ERGSKIVASM PSKMAVVLQM PRGNLETIYP RIMVLDGVRT 60
61 YIKALKYGDA FKVCRTHRLD LNILFDYDPD LFLKNIPVFV DGLYRVDYLD LFLTSLKPEN 120
121 VTTGMYSDTS KSQS
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 2gbcA |
| Description: | No description for 2gbcA was found. |
|
Region A: Residues: [756-857] |
1 11 21 31 41 51
| | | | | |
1 QQSVTTIDNK VNLLCKIIRE HLTSKYGDTH FQAIITSYLC ESPPKIEAAL GMISGLIKAQ 60
61 SETVDLAIEH MCFLVDVNML FDHALGLYDL KLALLIAQQS QK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [858-1028] |
1 11 21 31 41 51
| | | | | |
1 DPREYVPFLH EFQKQESLRR KFNIDCYLKR YERALGHLKE MENAFDEFKN FTIQHKLYPR 60
61 ALELYKYDKE AQKEVLIIFA QYLRENGKSN EAAIAYESVG KISEAIEAYK SAGMWRECLS 120
121 ILQQTTNSED LIRETAEDLA SLCIEKREHC DAGSINLLYL SNPREAVIQM C
|
| Detection Method: | |
| Confidence: | 6.154902 |
| Match: | 2fo7A |
| Description: | Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1029-1098] |
1 11 21 31 41 51
| | | | | |
1 KGSQYSEAIR IARATGDSSI YKDLLISVLG ESFGEASELV ADFRNQIKSQ TERILVLREK 60
61 KKEDPISWME
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.682 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.767 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.764 | a.46.1 | Methionine synthase domain |
| View | Download | 0.676 | a.46.1 | Methionine synthase domain |
| View | Download | 0.640 | a.118.11 | Cytochrome c oxidase subunit E |
|
Region A: Residues: [1099-1253] |
1 11 21 31 41 51
| | | | | |
1 GTMEDQTPDD ISLASTSLST NRSLYTQYTK SSNSSKMTRN TSKNNRRLER KRARGKKGTV 60
61 FEEEYLVNSL RRLIARVEEI RPEVHRLLEA LVRCNMTTQA SELQRNFANV IGTIGEKVIP 120
121 ILSVPVSTFE TALGEQPQAP VVPNVKPFEK LSILI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
