| Protein: | sap61 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 492 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sap61.
| Description | E-value | Query Range |
Subject Range |
|
|
666.0 | [0..5] | [491..2] |
|
|
623.0 | [0..5] | [492..3] |
|
|
617.0 | [0..5] | [492..2] |
|
|
605.0 | [0..5] | [492..2] |
|
|
597.0 | [0..5] | [492..2] |
|
|
597.0 | [0..3] | [492..2] |
|
|
596.0 | [0..3] | [492..2] |
|
|
595.0 | [0..3] | [492..2] |
|
|
594.0 | [0..3] | [492..2] |
|
Region A: Residues: [1-196] |
1 11 21 31 41 51
| | | | | |
1 MSESVLETER YAHEELERLQ QAIVDRQVAN PKAPRERLRL EHQSAQFLNQ FRETSKKLLV 60
61 SHESSDRLKD QEVARINADD DLTEFYKSLG EIQEFHKKYP DHKVEDLSQL YSIKPSQPGI 120
121 DEIDTLFRGE EMYGRFMDLN ECYEEYINLS NVQHISYLEY LKNLEDFDQI PKPEKNQTYI 180
181 NYITHLYEYL VSFYRR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [197-349] |
1 11 21 31 41 51
| | | | | |
1 THPLSNLDKI IAVFDTEFDA AWEAGLPGWY SHNAEAEKDG KDSTEAFYCE VCQKFFGKIT 60
61 VFEAHKKSKA HNKAVKRMQS SSPSTTSNTN EKQKGPKAIA RIEFLIKKLT SLLDDVRKDT 120
121 RENVVRRQTL TAAERLAEVE AAEREAFEQS TPS
|
| Detection Method: | |
| Confidence: | 2.15 |
| Match: | 1zr9A |
| Description: | Solution Structure of a Human C2H2-type Zinc Finger Protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.37529385176635 | bayes_pls_golite062009 |
| DNA binding | 3.3049326844117 | bayes_pls_golite062009 |
| nucleic acid binding | 3.24981360535232 | bayes_pls_golite062009 |
| snRNA binding | 3.16782731106334 | bayes_pls_golite062009 |
| RNA binding | 3.11293528368816 | bayes_pls_golite062009 |
| binding | 2.99742524370422 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.86343975521155 | bayes_pls_golite062009 |
| transcription factor activity | 2.44389510173662 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.57041104288348 | bayes_pls_golite062009 |
| mRNA binding | 1.28525296322454 | bayes_pls_golite062009 |
| transcription activator activity | 1.20323819132961 | bayes_pls_golite062009 |
| protein binding | 0.952480850696098 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.732558534458316 | bayes_pls_golite062009 |
| transcription repressor activity | 0.686318575498149 | bayes_pls_golite062009 |
| chromatin binding | 0.626365497850853 | bayes_pls_golite062009 |
| transcription factor binding | 0.515821187939278 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.380243728411498 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.200483461579207 | bayes_pls_golite062009 |
| tubulin binding | 0.151955152284472 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.113925660147477 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0855506955761403 | bayes_pls_golite062009 |
| microtubule binding | 0.05082413668213 | bayes_pls_golite062009 |
|
Region A: Residues: [350-492] |
1 11 21 31 41 51
| | | | | |
1 VSVEGNQDEE SDQDDEEKIY NPLKLPLGWD GKPIPFWLWK LHGLGKEFPC EICGNYVYMG 60
61 RKAFDKHFTE QRHIYGLKCL GISPSPLFNQ ITSIDEALQL WQKYKVDSKK RETTMASLNE 120
121 MEDDEGNVMS EKVYNDLKAQ GLL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
