| Protein: | sfc6 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 582 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sfc6.
| Description | E-value | Query Range |
Subject Range |
|
|
430.0 | [0..30] | [580..1187] |
|
|
417.0 | [0..30] | [580..1059] |
|
|
405.0 | [0..21] | [581..957] |
|
|
394.0 | [0..21] | [580..619] |
|
|
388.0 | [0..21] | [575..963] |
|
Region A: Residues: [1-500] |
1 11 21 31 41 51
| | | | | |
1 MGPKSKEYEN PSSYKNDEDN DDDGDFVLEN VMSEEDIEIE TPSRNRKRVS TTRRTPSKPI 60
61 RSQPLTPSSS KGAGNEPKSQ NSSTTRGSAK KQSSKGLEEK LINSYGTHVE SLNKGRRLIE 120
121 IWKYYETAPG QSSFEGQTSS DSKLQTLLNL DGQQLLSYSE NPFYLFEVKN LSISFHFESP 180
181 QQVEPCQPVN PFKENPQKSG FVVNTGIPLS SVSWLPTNKE TQFLAVGGML KFSETTESVF 240
241 MRTSGRNQIQ LWKLENKTNF KSEFILYHDW GSVLQLEWCP TISVEDSILG FLAVVCSDGK 300
301 LRVLRVPRSP VKFHVFVEQA DFTFGFNDSL ISCCTWVSPE HGDIHQILVG CSNGYLALWD 360
361 ILSSQECPLF YIPYHDSYIH NVVQCLDDFP WLFLTTAFDC YTRIFDIRDP IIDNRPLSHK 420
421 RDICYTITWN NMLQSIISCS ESQSVVIESL RGTSTQLLDE RNGSIISLSN SKFHPFVACA 480
481 ASDGIVTIVN PFRLLGFSHK
|
| Detection Method: |  |
| Confidence: | 32.221849 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 3.30602815841673 | bayes_pls_golite062009 |
| binding | 2.94886969723315 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 1.89191344969218 | bayes_pls_golite062009 |
| transcription initiation factor activity | 1.47917368317999 | bayes_pls_golite062009 |
| DNA binding | 1.4719281452238 | bayes_pls_golite062009 |
| protein binding | 1.42618832381942 | bayes_pls_golite062009 |
| transcription factor activity | 0.883016478133271 | bayes_pls_golite062009 |
| 0.88172763425403 | bayes_pls_golite062009 | |
| transcription repressor activity | 0.658573452658359 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| snoRNA binding | 0.347797037104681 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0532675540353509 | bayes_pls_golite062009 |
|
Region A: Residues: [501-582] |
1 11 21 31 41 51
| | | | | |
1 QKANVHRIFQ LEYSEKQDSY RMLDGFRPRL PKAKKLDMYI YPWQIQVNKV EWNGNKGYAG 60
61 WLASGMACGI LRVEDLSAVE RR
|
| Detection Method: | |
| Confidence: | 24.69897 |
| Match: | 2pm6B |
| Description: | No description for 2pm6B was found. |
