YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1B3.13
Organism:	Schizosaccharomyces pombe
Length:	800 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1B3.13.

Description	E-value	Query Range	Subject Range
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	654.0	[0..3]	[793..756]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	607.0	[0..19]	[703..1165]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	598.0	[0..27]	[724..865]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	571.0	[0..58]	[722..1035]
gi\|110168368, gi... - gi\|71673858\|ref\|ZP_00671606.1\| G-protein beta WD-40 repeat [Trichodesmium erythraeum IMS101], gi\|716...	557.0	[0..5]	[712..824]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	545.0	[0..27]	[673..566]

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Predicted Domain #1

Region A:
Residues: [1-591]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVGSLEVKK NDKDPWSKTA YLGGRLVSKI PAVYSNDNKF VFLTYDTFIG IFSLITGDCI  60
   61 NRIFFPNNLA NLLPVAVLLS PENAFELYVI FQSGYVCVHD WSNSELLRTM EISTRVHAAS 120
  121 FSGKLLFAVT DTPASDSASS QDRFTLYALS PSTSKEGSSI LIPTFVSKFN EFLALDSSLR 180
  181 DNNLATVAVI TTDKAIFSLN VPKKKRSQRW IHREHLFNMP QKLTNVSLCG SACAVSDDEG 240
  241 KIHVINDISN EKFNPQILHW HANPLNGLSW ALNGEYLLSG GQEGVLVLWQ METSHRQFLP 300
  301 RLGSSILSIA TSHDSDSYAL HLGDNSLVVI RAVDLAEQIH VSGINSFESK YLTSTGPKNT 360
  361 SKQLQGLVQF SSVSPNGELL LMSSSSFNGH SVSVQEYDLT KDSTIRKFEA ARYSYSSVSK 420
  421 NSDDATSLDN GHVGSVAVTS SRNGLYIATI DTWCTNIIDE QQRNVKQTAL KFWQFDSVQK 480
  481 TWVLMTRIDN PHGNLEVVTA LKMMTSSNRF ITVGTDATLR IWALLPGSSA WKCVAIHHFA 540
  541 NTHSQASIKQ RYGFSKALTC SLDDSIIGFG YGSCMHFINS ETLEEISTVD L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	1pguA
Description:	Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
snoRNA binding	6.03079504484743	bayes_pls_golite062009
	3.41022148055944	bayes_pls_golite062009
RNA binding	3.0829625416797	bayes_pls_golite062009
binding	1.83286470399158	bayes_pls_golite062009
transcription regulator activity	1.25687092973217	bayes_pls_golite062009
nucleic acid binding	1.20712373307552	bayes_pls_golite062009
structural molecule activity	1.20572493724069	bayes_pls_golite062009
protein binding	0.987581964031738	bayes_pls_golite062009
DNA binding	0.711274653406079	bayes_pls_golite062009
cytoskeletal protein binding	0.523052412917759	bayes_pls_golite062009
transcription factor activity	0.243992994917491	bayes_pls_golite062009
mRNA binding	0.0519838181830878	bayes_pls_golite062009
ligase activity	0.00971558442368137	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [592-653]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHGGQLENAQ FLNAEHCVII SQRRLLVWNV ISASVQWTLA SKFTGLLASS SSGNDFAVID  60
   61 FN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.522879
Match:	1n6dA
Description:	Tricorn protease; Tricorn protease N-terminal domain; Tricorn protease domain 2
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [654-800]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSYSRLIIFS PDSPKIQSIH IFKTLPVALH YLHGGFVVLD NKSIIHVYAG DLTTKIPSAQ  60
   61 LSIDNTSRSL LGDFQKRNVP LLNLENPISG SQGLHYKRLT TDMIHNLFNV PSNSPVNMQA 120
  121 IYNTFSKMAV GEPMESLGTQ IATLNTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	1nr0A
Description:	Actin interacting protein 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: