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Protein Overview: SPAC1B3.13

General Information:
Name(s) found: SPAC1B3.13 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • U3 snoRNP-associated protein Nan1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 800 amino acids

    Gene Ontology:
    Cellular Component: protein complex [RCALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: maturation of SSU-rRNA [ISSLink to PubMed article]
    Molecular Function: snoRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVGSLEVKK NDKDPWSKTA YLGGRLVSKI PAVYSNDNKF VFLTYDTFIG IFSLITGDCI  60
   61 NRIFFPNNLA NLLPVAVLLS PENAFELYVI FQSGYVCVHD WSNSELLRTM EISTRVHAAS 120
  121 FSGKLLFAVT DTPASDSASS QDRFTLYALS PSTSKEGSSI LIPTFVSKFN EFLALDSSLR 180
  181 DNNLATVAVI TTDKAIFSLN VPKKKRSQRW IHREHLFNMP QKLTNVSLCG SACAVSDDEG 240
  241 KIHVINDISN EKFNPQILHW HANPLNGLSW ALNGEYLLSG GQEGVLVLWQ METSHRQFLP 300
  301 RLGSSILSIA TSHDSDSYAL HLGDNSLVVI RAVDLAEQIH VSGINSFESK YLTSTGPKNT 360
  361 SKQLQGLVQF SSVSPNGELL LMSSSSFNGH SVSVQEYDLT KDSTIRKFEA ARYSYSSVSK 420
  421 NSDDATSLDN GHVGSVAVTS SRNGLYIATI DTWCTNIIDE QQRNVKQTAL KFWQFDSVQK 480
  481 TWVLMTRIDN PHGNLEVVTA LKMMTSSNRF ITVGTDATLR IWALLPGSSA WKCVAIHHFA 540
  541 NTHSQASIKQ RYGFSKALTC SLDDSIIGFG YGSCMHFINS ETLEEISTVD LPHGGQLENA 600
  601 QFLNAEHCVI ISQRRLLVWN VISASVQWTL ASKFTGLLAS SSSGNDFAVI DFNSSYSRLI 660
  661 IFSPDSPKIQ SIHIFKTLPV ALHYLHGGFV VLDNKSIIHV YAGDLTTKIP SAQLSIDNTS 720
  721 RSLLGDFQKR NVPLLNLENP ISGSQGLHYK RLTTDMIHNL FNVPSNSPVN MQAIYNTFSK 780
  781 MAVGEPMESL GTQIATLNTE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..591] PSI-BLAST 33.522879 Actin interacting protein 1
    2 View Details [592..653] PSI-BLAST 9.522879 Tricorn protease; Tricorn protease N-terminal domain; Tricorn protease domain 2
    3 View Details [654..800] PSI-BLAST 46.39794 Actin interacting protein 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • snoRNA binding
    		•  6.03079504484743 bayes_pls_golite062009
    		• 3.41022148055944 bayes_pls_golite062009
  • RNA binding
    		•  3.0829625416797 bayes_pls_golite062009
  • binding
    		•  1.83286470399158 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25687092973217 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.20712373307552 bayes_pls_golite062009
  • structural molecule activity
    		•  1.20572493724069 bayes_pls_golite062009
  • protein binding
    		•  0.987581964031738 bayes_pls_golite062009
  • DNA binding
    		•  0.711274653406079 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.523052412917759 bayes_pls_golite062009
  • transcription factor activity
    		•  0.243992994917491 bayes_pls_golite062009
  • mRNA binding
    		•  0.0519838181830878 bayes_pls_golite062009
  • ligase activity
    		•  0.00971558442368137 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle