| Protein: | thi5 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 857 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for thi5.
| Description | E-value | Query Range |
Subject Range |
|
|
235.0 | [0..30] | [857..6] |
|
|
219.0 | [0..299] | [856..225] |
|
|
216.0 | [0..3] | [854..45] |
|
|
214.0 | [0..1] | [799..1] |
|
|
213.0 | [0..218] | [857..154] |
|
|
213.0 | [0..26] | [846..57] |
|
|
208.0 | [0..297] | [827..208] |
|
Region A: Residues: [1-97] |
1 11 21 31 41 51
| | | | | |
1 MCPSDFSSRS LFLEAKEEEY KQRRRVPLDS RRRVRRACLS CRAKKIRCSG SEPCQACIAT 60
61 PSQCKYADSL KERTPSKQFI AELSQRQKCF EYLMELL
|
| Detection Method: |  |
| Confidence: | 6.522879 |
| Match: | 1zmeC |
| Description: | PUT3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.98081393153291 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| transcription activator activity | 2.24483536326713 | bayes_pls_golite062009 |
|
Region A: Residues: [98-256] |
1 11 21 31 41 51
| | | | | |
1 CPSLPHDTRS LVKLCKHVES SLASGSDVRS LLIPGSIDQS VLKVAATNNK DDSSAVKSAN 60
61 VSFPSSSTPP SSDSNFSSIQ NTDLNTSIKF TENISANAIH VNQDKVIRSA NNLIINSQPI 120
121 LPVRSFLDAL GEPIYLSPTS STYFLNSVLA SLQLNSSNT
|
| Detection Method: | |
| Confidence: | 2.32 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.77469997789536 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.70904317608141 | bayes_pls_golite062009 |
| transcription activator activity | 2.1512787242583 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.08956709478484 | bayes_pls_golite062009 |
|
Region A: Residues: [257-349] |
1 11 21 31 41 51
| | | | | |
1 PESLLIDYQS KIPEDLSSSL LPLELNTLQS TPTSVSVGSA SSQGTHEYSI INLTSNHSSF 60
61 SLKALKKIAH NLLPPVSVAE RYANEFFLRY QSF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.823 | 0.021 | thiamin biosynthetic process | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
|
Region A: Residues: [350-522] |
1 11 21 31 41 51
| | | | | |
1 FYFYPPSVFS NRYQILADGL VNSDTLDTGF LAVALLIVVL GHFSNNNINV LPKEVQLSHI 60
61 DSMIQISEQL ISSLLNRCTL SSIQAVFLLS LYHFLTGNFK CAYSYLGFAI HSAHTLGLEH 120
121 GSTDNSTLNE VSTEETSIRI CWSLRVLASF LYIQSGITPI INLFPNGLNS LKL
|
| Detection Method: | |
| Confidence: | 19.0 |
| Match: | PF04082.9 |
| Description: | No description for PF04082.9 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [523-606] |
1 11 21 31 41 51
| | | | | |
1 PTVVPELEAR HLPSSVFHFV AIIKYAEISV RSLNSLYESS SDYLMDVSNF PKLLLKVERI 60
61 YSQARNWKLN LTHQQLNGTN DTSD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [607-857] |
1 11 21 31 41 51
| | | | | |
1 LLFHSNVSLH LFYHYLIVKV SCPIMFFYLN NWYSVKPSSF TKGLNNKPSL EDVFSNLETC 60
61 YESAKAIVQL SSKLLSAGQM DKCFYLEFEI LYCSAIVLFL FSVMHLGAEN PLLESIYLLE 120
121 DMGSRTIDSK VRLEKLKSAI EIFDINSATE MPINEPLSAS FESVNKENSQ SGYMAWQNWV 180
181 TELSSSNIPL GHALGNPESN NSSNSFKPSH PSQSFLVNES LDFSSNPKEP PFLPWSEALL 240
241 NMDMQLNRLG P
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
