| Protein: | SPBC21B10.13c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 201 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21B10.13c.
| Description | E-value | Query Range |
Subject Range |
|
|
121.0 | [0..14] | [197..170] |
|
|
118.0 | [0..7] | [200..94] |
|
|
116.0 | [0..27] | [199..7] |
|
|
116.0 | [0..27] | [199..7] |
|
|
116.0 | [0..14] | [198..19] |
|
|
114.0 | [0..7] | [193..198] |
|
|
113.0 | [0..1] | [197..134] |
|
|
113.0 | [0..7] | [193..193] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MSLSDSPSKS GNTGKDLISN NEAKNHEDEE THQKKRRRRT TDAEATLLEQ YFLKTPKPSL 60
61 IERQELSKKL KSSMTPRELQ IWFQNKRQSL RRSNCLSRNR LEG
|
| Detection Method: |  |
| Confidence: | 21.69897 |
| Match: | 1pufA |
| Description: | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [104-201] |
1 11 21 31 41 51
| | | | | |
1 TGENSLLRRK STLTLCETST GQAELFFQSW PLHSQSVVGE MIHHEQDDYN KENKQQKVVD 60
61 TTKDISRGSN GNEDSAAHQE LEECARSLVE LQQQCNDH
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.506 | 0.526 | transcription factor activity | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.551 | 0.232 | regulation of transcription, DNA-dependent | a.29.2 | Bromodomain |
| View | Download | 0.540 | 0.000 | transcription factor activity | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.727 | 0.000 | transcription factor activity | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.540 | N/A | N/A | a.29.2 | Bromodomain |
