| Protein: | SPAC3H8.08c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 563 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3H8.08c.
| Description | E-value | Query Range |
Subject Range |
|
|
296.0 | [0..5] | [558..4] |
|
|
234.0 | [0..2] | [550..18] |
|
|
217.0 | [0..4] | [550..381] |
|
|
195.0 | [0..10] | [476..35] |
|
|
194.0 | [0..247] | [542..481] |
|
|
194.0 | [0..3] | [523..35] |
|
|
191.0 | [0..9] | [544..37] |
|
|
191.0 | [0..2] | [490..5] |
|
Region A: Residues: [1-119] |
1 11 21 31 41 51
| | | | | |
1 MSSSPPALKK FRKRSPKSCL ICRRRKVKCD RQQPCSRCKE RNEVCTYADD TIDKMNVGPH 60
61 PSHSENASDS ETTLEVSPDI NPKKNEKFDF YGWRSLFELI KYRKDSDMCS SRPSFSIQA
|
| Detection Method: |  |
| Confidence: | 6.30103 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [120-256] |
1 11 21 31 41 51
| | | | | |
1 YSSYKDNVVV ESLANLLPPF CISQKIVNLF FKTLNVVCPI YDQETVEKSL NNIESPESFS 60
61 YEDAFTLLPI IAATIQLSDL PDVILNFYNS AGITPLESSR LINLKLNEIS EQEYKHLCLP 120
121 DKEIIQMLLL RAYATKF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [257-458] |
1 11 21 31 41 51
| | | | | |
1 RTRIRGVNTD LCRSIHVSTL VTPLFQVTEK IGKNTSDLWF ALCEIDGLEC VLKYRPPFIQ 60
61 HDTYGRLKPL RCFFNDDISY NFHLLLGRLL DCGVSIYKSV HSLTVSKFID KLESYESQLS 120
121 LILVDIEAKF YDPSNEDIQF RYIFLKMVFW TARVNLYQCF ITLDSGILED EETIIGNLGE 180
181 SCIQCVRLLI SQITILEKRG WL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [459-563] |
1 11 21 31 41 51
| | | | | |
1 LVALLEIIHA LMLAAFCRDK GFEVPSDLGD ITLYVQERMV DIVTFDDGMA VRFGYVLRFI 60
61 NSMLHPNEPP MQDAEPETTE DPSKLFADIF DFTSNYFIPS ALLDQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
