YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBC16G5.17

General Information:
Name(s) found: SPBC16G5.17 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • transcription factor, zf-fungal binuclear cluster type [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 560 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    integral to membrane [IEA]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGKSKNRAH KNIRARSCLR CRRRKVKCDR QYPCSRCKES EESCTYGVNE QAVQLLEEPL  60
   61 SRPITRETDS SAHQETRTRL EENNLPKTQK FGFVDWKTIL KSSAEFQGIV QRDPESRLRE 120
  121 ALETDPKLKK RLECILETIP PWDVCESLLK VYANTFNVTN YILDFEQADK LLSDLKNSNH 180
  181 VFATSIILIV TAIAVALSLE SFPSNIERYF SAVNHSAIEL SDALNSKIDD FLNEEVIFRL 240
  241 WRNIDRIRLH AIRAQLCMRN QFRSMNTDLC YAIHYACFVN PIFQNTDTEY EANMEVWLSI 300
  301 CEIDALECVL RSCQPWVQHD IYGKLLSQRK MGSDVISYEF HSLLGQLLTC GLEIYKAIHT 360
  361 STVNEFVNSI QFYESQLSLV LMEIESKFSN IDGSDIHFRY LFLKTVFWTV RKNLYQGFIT 420
  421 VSRTLVPNYP DIVQKLGQTS IQLSRLISNS MDCFEKYGWL KAMLILVTHT FLIIHVCSER 480
  481 GYDVPKDFWN VTASVQATLE EKKYPGIVWE RIHYVLNIYT TINSVEPELS EDHGDLDDQN 540
  541 LFQVFTDIFD FNFNFPLPNL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..124] FFAS03 2.48 PPR1
    2 View Details [125..201] deduced N/A No confident structure predictions are available.
    3 View Details [202..375] MSA 6.389996 View MSA. No confident structure predictions are available.
    4 View Details [376..560] MSA 3.231997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.34861813464065 bayes_pls_golite062009
  • DNA binding
    		•  4.03985756894684 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.97978190843512 bayes_pls_golite062009
  • transcription factor activity
    		•  2.87348461329489 bayes_pls_golite062009
  • binding
    		•  2.82809978070212 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.80191339934741 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.67344049333457 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.50774349911815 bayes_pls_golite062009
  • transcription activator activity
    		•  0.822069987038721 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle