| Protein: | prp2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 517 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prp2.
| Description | E-value | Query Range |
Subject Range |
|
|
221.0 | [0..161] | [514..56] |
|
|
219.0 | [0..161] | [514..56] |
|
|
218.0 | [0..161] | [514..56] |
|
|
217.0 | [0..161] | [514..56] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MDLSSRLSSG SSRIPKRHRD YRDEEPRRER GSGGIGREDP RGHYGSERPR RRRRDESDFR 60
61 RHRESRERSY REDERPRRER RYDDYEPRSL RYSSVGRSRS PPPSRERSVR S
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [112-192] |
1 11 21 31 41 51
| | | | | |
1 IEQELEQLRD VTPINQWKRK RSLWDIKPPG YELVTADQAK MSGVFPLPGA PRAAVTDPEK 60
61 LLEFARSAEG SIIAPPPPLQ P
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [193-307] |
1 11 21 31 41 51
| | | | | |
1 GASRQARRLV VTGIPNEFVE DAFVSFIEDL FISTTYHKPE TKHFSSVNVC KEENFAILEV 60
61 ATPEDATFLW GLQSESYSND VFLKFQRIQN YIVPQITPEV SQKRSDDYAK NDVLD
|
| Detection Method: | |
| Confidence: | 29.522879 |
| Match: | 1fxlA |
| Description: | Hu antigen D (Hud) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [308-517] |
1 11 21 31 41 51
| | | | | |
1 SKDKIYISNL PLNLGEDQVV ELLKPFGDLL SFQLIKNIAD GSSKGFCFCE FKNPSDAEVA 60
61 ISGLDGKDTY GNKLHAQFAC VGLNQAMIDK SNGMAILTEL AKASSQSIPT RVLQLHNLIT 120
121 GDEIMDVQEY EDIYESVKTQ FSNYGPLIDI KIPRSIGTRN SGLGTGKVFV RYSDIRSAEV 180
181 AMEEMKGCKF NDRTIVIAFY GEDCYKANAW
|
| Detection Method: | |
| Confidence: | 29.154902 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
| transporter activity | 0.417047632648771 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.288834004308736 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.288804044686487 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00171911393626201 | bayes_pls_golite062009 |
