| Protein: | spo6 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 474 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spo6.
| Description | E-value | Query Range |
Subject Range |
|
|
486.0 | [0..44] | [472..63] |
|
|
460.0 | [0..11] | [468..21] |
|
|
448.0 | [0..12] | [430..9] |
|
|
417.0 | [0..10] | [474..53] |
|
|
414.0 | [0..10] | [474..38] |
|
|
397.0 | [0..98] | [468..75] |
|
|
288.0 | [0..10] | [465..53] |
|
|
286.0 | [0..10] | [452..38] |
|
|
282.0 | [0..11] | [446..38] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MDFYSVKSQP FVRSPLVDQN PSIQNINEEV KRDIQNPLSY KTETSDKELC QTAACATSCS 60
61 DWYPQQQTHM PHQNAFDSAK ATAKMALPPT AFSNYCVKPS LTR
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [104-235] |
1 11 21 31 41 51
| | | | | |
1 NKDIPRTSIR VSKLRYWQRD YRLAFPNFIF YFDNVDEEIK RRVTQKINNL GAKVATLFTF 60
61 EVTHFITTRT TDPEMCQPND VLYLSKTANM KIWLLDKLLN RILFTLLNSD SLVNTSASCL 120
121 QSLLDGEKVY GT
|
| Detection Method: | |
| Confidence: | 1.53 |
| Match: | 1wf6A |
| Description: | The third BRCA1 C-terminus (BRCT) domain of Similar to S.pombe rad4+/cut5+ product |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.35986940498978 | bayes_pls_golite062009 |
| nucleic acid binding | 1.23726848385925 | bayes_pls_golite062009 |
| DNA binding | 1.21803358548345 | bayes_pls_golite062009 |
| protein binding | 1.17425096415314 | bayes_pls_golite062009 |
| transcription regulator activity | 0.948550635369826 | bayes_pls_golite062009 |
| damaged DNA binding | 0.573570505312825 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.253994205417832 | bayes_pls_golite062009 |
| catalytic activity | 0.201193336576136 | bayes_pls_golite062009 |
|
Region A: Residues: [236-362] |
1 11 21 31 41 51
| | | | | |
1 SDKDFYVPSK NVEYFREYFL CIRDLSQYYK PIAVREWEKT LDSGEILWPS LAITAQGRCP 60
61 FNTGRRRELK ITKHNHPAHE IRKQLLSCTN QTNQNNVVKN SASVLVRQIM GDYNITESAV 120
121 DGAKQMP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [363-474] |
1 11 21 31 41 51
| | | | | |
1 TEFPKPENLL PVEKRAAMSP LNLLEPRLIN KQNTLANQSP RQPPNAFDAD PLAHKKVKIE 60
61 TKSGYCENCC ERYKDLERHL GGKHHRRFAE KDENFQGLDD LFLLIRRPIR TN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
