| Protein: | cut3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1324 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cut3.
| Description | E-value | Query Range |
Subject Range |
|
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305.0 | [0..1] | [1324..1] |
|
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304.0 | [0..93] | [1322..6] |
|
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303.0 | [0..61] | [1319..13] |
|
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301.0 | [0..66] | [1322..22] |
|
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301.0 | [0..70] | [1316..207] |
|
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301.0 | [0..74] | [1322..30] |
|
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300.0 | [0..98] | [1321..52] |
|
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300.0 | [0..85] | [1322..43] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MSDKGIFRTS STPSIVDVTP DRGERPRKLV RSVLESPSQK DVASIVKIEQ TPSRPFFNDF 60
61 LKKRITDSLN ERPNLLNKFM SAQDGTPSKS TGFNERSSQL VSEFTTTEDI ENCEETTQVL 120
121 P
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [122-301] |
1 11 21 31 41 51
| | | | | |
1 PRLVVYELRL TNFKSYAGTQ IVGPFHPSFS SIVGPNGSGK SNVIDALLFV FGFRASKLRQ 60
61 SKASALIHKS ATHPSLDSCD VEITFKEVNS DFTYVDGSEL TVRRTAYKNN TSKYFVNGVE 120
121 SSFSAVSNLL KEKGIDLNHK RFLILQGEVE SIAQMKPRAI SEGDDGLLEY LEDIIGTSKY 180
181
|
| Detection Method: | |
| Confidence: | 16.522879 |
| Match: | 1w1wA |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [302-638] |
1 11 21 31 41 51
| | | | | |
1 KPIIEENMQE LSNSDDICAE KESRLKLVLS EKAKLEDSKN SVLSFLKDEN ELFMKQNQLY 60
61 RTILYETRNK KTLVQNLLNS LEGKLQAHLE KFEQTERDIS EKNEEVKSLR EKAAKVKNDC 120
121 TSEKKTRQSY EQQTVKIEEQ LKFLLNKEKK LKKSIEALSF EKSEAENSLS SHDIDSQKLN 180
181 SEIADLSLRL QQEELSLDDI RKSLQGKTEG ISNAIEEKQK AMAPALEKIN QLTSEKQILQ 240
241 VELDMLLNKE NDLINDVESS QSSLDKLRND AEENRNILSS KLKVLSDLKG EKKDVSKNIE 300
301 RKKETVHNTY RNLMSNRTKL EEMKASLSSS RSRGNVL
|
| Detection Method: | |
| Confidence: | 11.09691 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [639-802] |
1 11 21 31 41 51
| | | | | |
1 ESLQRLHESD NLNGFFGRLG DLATIDEAYD VAISTACPAL NHIVVDNIET GQKCVAFLRS 60
61 NNLGRASFII LKELAQKNLA RIQTPENVPR LFDLLRFNDQ KFAPAFYNVL QNTLVAKNLE 120
121 QANRIAYGKT RWRVVTLSGQ LIDKSGTMTG GGTRVKKGGM SSAI
|
| Detection Method: | |
| Confidence: | 4.1 |
| Match: | 1gxlA |
| Description: | Smc hinge domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.7707163143035 | bayes_pls_golite062009 |
| protein binding | 1.2343536336523 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.56283355879326 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.511272811276509 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.299763949828861 | bayes_pls_golite062009 |
| DNA secondary structure binding | 0.284996962785104 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.248383422632029 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.235472660839816 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.233111707634177 | bayes_pls_golite062009 |
| protein dimerization activity | 0.210107708818734 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.155323194767055 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.101477244722795 | bayes_pls_golite062009 |
| ATPase activity | 0.08869715759545 | bayes_pls_golite062009 |
|
Region A: Residues: [803-1106] |
1 11 21 31 41 51
| | | | | |
1 TSDVSPASVE TCDKQVQLED TRYRQHLSEL ESLNQRFTEI SERIPSAELE ISKLQLDVSA 60
61 CDRLVAGEER RILQLKSDLK SIRNNNERKR NLQNKISNMD KEVEAININN EGLVTEIKTL 120
121 QDKIMEIGGI RYRIQKSKVD DLHEQLKFVK DKLNKMSFKK KKNEQRSQSF QVELSNLTSE 180
181 YDTTTESIAT LKTELQSLNK YVDEHKSRLR EFENALWDIN SSIDELVKFI EFESKQMNSV 240
241 KAERIELENQ IQEQRTALSE VGNNENKYLK LMSNLKLHNL TEFCDQTTMD STFPEYSEDE 300
301 LSSV
|
| Detection Method: | |
| Confidence: | 2.39 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [1107-1162] |
1 11 21 31 41 51
| | | | | |
1 DKSELVSNIS VLKKKTEDRE VDINVLSEYR RCNKEAEKRD SDYQSELQKR TDLKKV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1163-1324] |
1 11 21 31 41 51
| | | | | |
1 VTDLQSQRLD EFMYGFGIIS MKLKEMYQII TMGGNAELEL VDSLDPFSEG VLFSVMPPKK 60
61 SWKNISNLSG GEKTLSSLAL VFALHNYKPT PLYVMDEIDA ALDFKNVSIV ANYIKERTKN 120
121 AQFIVISLRS NMFELSSRLV GIYKTANMTK SVTINNKEIL TD
|
| Detection Method: | |
| Confidence: | 17.39794 |
| Match: | 1xewY |
| Description: | Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases. |
Matching Structure (courtesy of the PDB): |
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