| Protein: | rti1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 371 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rti1.
| Description | E-value | Query Range |
Subject Range |
|
|
356.0 | [0..20] | [256..53] |
|
|
338.0 | [0..5] | [261..12] |
|
|
337.0 | [0..5] | [261..12] |
|
|
313.0 | [0..8] | [242..27] |
|
|
308.0 | [0..8] | [200..27] |
|
|
308.0 | [0..4] | [217..1] |
|
|
308.0 | [0..4] | [217..1] |
|
Region A: Residues: [1-206] |
1 11 21 31 41 51
| | | | | |
1 MGSLPDQSSC EEFTDSQQDK MTKLLAMQLG PEYISRRSGP GGGSVTYLEA WKAIELANEI 60
61 FGFNGWSSSI QDIHVDYVEE TKEKKFNVGI SVIVRVTLKD GSFHEDVGYG SIENCRVKAL 120
121 AYEKCKKEGT TDALKRALRN FGSSMGNCLY DKRYIQKILK MAPAQAEFNY DNLLRANKRP 180
181 YARFAQKVST PIESHANKSV KLEHKN
|
| Detection Method: |  |
| Confidence: | 83.522879 |
| Match: | 1kn0A |
| Description: | The homologous-pairing domain of Rad52 recombinase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.14765341131293 | bayes_pls_golite062009 |
| nucleic acid binding | 3.0351747710117 | bayes_pls_golite062009 |
| protein binding | 1.64057905923545 | bayes_pls_golite062009 |
| RNA binding | 1.51047378734681 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.43500771925528 | bayes_pls_golite062009 |
| DNA binding | 1.36164279504822 | bayes_pls_golite062009 |
| structural molecule activity | 1.28116258970047 | bayes_pls_golite062009 |
| transcription regulator activity | 1.01871957569312 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.904446819959466 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.642887555726933 | bayes_pls_golite062009 |
| double-stranded RNA binding | 0.486416546047936 | bayes_pls_golite062009 |
| DNA helicase activity | 0.44243422495341 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.314856869078672 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.26445124843094 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.199046986762565 | bayes_pls_golite062009 |
| transcription factor activity | 0.1846534408189 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.12518470735954 | bayes_pls_golite062009 |
|
Region A: Residues: [207-371] |
1 11 21 31 41 51
| | | | | |
1 SIEKKISNVD KPISDLIEND IHESLPALQN PPIQSHSETD LYADEELDSI LMHHERPPIP 60
61 ESPRVEEFEE LLNQFEGDEK VSVDKIDAHD KMTEAQVVKI PPVQFMNARV AAAENPHIKH 120
121 EGMAFQLHKK SNSILKSSNI DHNRSMPIRR PSLTSNNSAN TFSTK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
