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Protein Overview: rti1

General Information:
Name(s) found: rti1 / SPBC119.14 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • Rad22 homolog Rti1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 371 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear chromosome [ISSLink to PubMed article]
    Biological Process: double-strand break repair via homologous recombination [IGILink to PubMed article]
    protein homooligomerization [IDALink to PubMed article]
    meiotic DNA repair synthesis [IMPLink to PubMed article]
    DNA recombinase assembly [ISSLink to PubMed article]
    double-strand break repair [ISSLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed articleLink to PubMed articleLink to PubMed article]
    protein homodimerization activity [IPILink to PubMed article]
    DNA strand annealing activity [ISSLink to PubMed article]
    recombinase activity [ISSLink to PubMed article]
    single-stranded DNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLPDQSSC EEFTDSQQDK MTKLLAMQLG PEYISRRSGP GGGSVTYLEA WKAIELANEI  60
   61 FGFNGWSSSI QDIHVDYVEE TKEKKFNVGI SVIVRVTLKD GSFHEDVGYG SIENCRVKAL 120
  121 AYEKCKKEGT TDALKRALRN FGSSMGNCLY DKRYIQKILK MAPAQAEFNY DNLLRANKRP 180
  181 YARFAQKVST PIESHANKSV KLEHKNSIEK KISNVDKPIS DLIENDIHES LPALQNPPIQ 240
  241 SHSETDLYAD EELDSILMHH ERPPIPESPR VEEFEELLNQ FEGDEKVSVD KIDAHDKMTE 300
  301 AQVVKIPPVQ FMNARVAAAE NPHIKHEGMA FQLHKKSNSI LKSSNIDHNR SMPIRRPSLT 360
  361 SNNSANTFST K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..206] PSI-BLAST 83.522879 The homologous-pairing domain of Rad52 recombinase
    2 View Details [207..371] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.14765341131293 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.0351747710117 bayes_pls_golite062009
  • protein binding
    		•  1.64057905923545 bayes_pls_golite062009
  • RNA binding
    		•  1.51047378734681 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.43500771925528 bayes_pls_golite062009
  • DNA binding
    		•  1.36164279504822 bayes_pls_golite062009
  • structural molecule activity
    		•  1.28116258970047 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.01871957569312 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.904446819959466 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.642887555726933 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  0.486416546047936 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.44243422495341 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.314856869078672 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.26445124843094 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.199046986762565 bayes_pls_golite062009
  • transcription factor activity
    		•  0.1846534408189 bayes_pls_golite062009
  • DNA strand annealing activity
    		•  0.12518470735954 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle