YRC Public Data Repository - Protein Structure Prediction

Protein:	rpn10
Organism:	Schizosaccharomyces pombe
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpn10.

Description	E-value	Query Range	Subject Range
gi\|11281550 - pir\|\|T51606 probable 26S proteasome non-ATPase chain S5a [imported] - rice gi\|3550985, gi\|1... - gi\|3550985\|dbj\|BAA32704.1\| OsS5a [Oryza sativa Japonica Group], gi\|222624546\|gb\|EEE58678.1\| hypothet...	205.0	[0..1]	[243..1]
gi\|44980788 - gi\|44980788\|gb\|AAS50693.1\| ABL078Cp [Ashbya gossypii ATCC 10895] gi\|45185152, gi\|... - gi\|45185152\|ref\|NP_982869.1\| ABL078Cp [Ashbya gossypii ATCC 10895], gi\|44980788\|gb\|AAS50693.1\| ABL07...	203.0	[0..1]	[241..28]
gi\|66524917 - gi\|66524917\|ref\|XP_393112.2\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 4 (2...	201.0	[0..1]	[235..1]
gi\|8918328 - gi\|8918328\|dbj\|BAA97576.1\| pUb-R4 [Mus musculus]	197.0	[0..1]	[218..1]
gi\|8918353, gi\|2... - gi\|8918353\|dbj\|BAA97581.1\| pUb-R5 [Homo sapiens], gi\|25121958\|ref\|NP_722544.1\| proteasome 26S non-AT...	197.0	[0..1]	[218..1]
gi\|162694315, gi... - gi\|168003988\|ref\|XP_001754694.1\| predicted protein [Physcomitrella patens subsp. patens], gi\|1626943... gi\|8272456 - gi\|8272456\|gb\|AAF74210.1\|AF076610_1 multiubiquitin chain-binding protein [Physcomitrella patens]	194.0	[0..1]	[242..1]
gi\|125980166, gi... - gi\|54641103\|gb\|EAL29854.1\| GA20484 [Drosophila pseudoobscura pseudoobscura], gi\|125980166\|ref\|XP_001... gi\|54641103\|gb\|E... - GA20484-PA [Drosophila pseudoobscura], GA20484 [Drosophila pseudoobscura pseudoobscura]	193.0	[0..1]	[238..1]
gi\|21594247 - gi\|21594247\|gb\|AAM65985.1\| multiubiquitin chain binding protein MBP1 [Arabidopsis thaliana]	192.0	[0..1]	[225..1]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLEATMILI DNSEWMINGD YIPTRFEAQK DTVHMIFNQK INDNPENMCG LMTIGDNSPQ  60
   61 VLSTLTRDYG KFLSAMHDLP VRGNAKFGDG IQIAQLALKH RENKIQRQRI VAFVGSPIVE 120
  121 DEKNLIRLAK RMKKNNVAID IIHIGELQNE SALQHFIDAA NSSDSCHLVS IPPSPQLLSD 180
  181 LVNQSPIGQG VVASQNQFEY GVDPNLDVEL ALALELSMAE ERARQEVAAQ KSSEETEDKK 240
  241 MQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.154902
Match:	1n3yA
Description:	Integrin alpha-x beta2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	4.02098822555334	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	3.82496592594463	bayes_pls_golite062009
endopeptidase activity	3.72596563304893	bayes_pls_golite062009
binding	3.32950434867692	bayes_pls_golite062009
hydrolase activity	2.72944528058473	bayes_pls_golite062009
protein binding	1.4332924081006	bayes_pls_golite062009
nucleic acid binding	1.41389987484225	bayes_pls_golite062009
DNA binding	1.27751137443334	bayes_pls_golite062009
protein dimerization activity	0.45109468643752	bayes_pls_golite062009
protein complex binding	0.0341925447010603	bayes_pls_golite062009
protein heterodimerization activity	0.0195372592716698	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: