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Protein Overview: gi|11281550

General Information:
Name(s) found: gi|11281550 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • pir||T51606 probable 26S proteasome non-ATPase chain S5a [imported] - rice [NCBI NR]
    • Organism: Oryza sativa
    Length: 402 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLEATMICI DNSEWMRNGD YSPSRFQAQA DAVNLICGAK TQSNPENTVG VMTMAGKGVR  60
   61 VLVTPTSDLG KILACMHGLE VGAEANLAAA IQVAQLALKH RQNKRQQQRI IAFIGSPVKY 120
  121 DKKVLETIGK KLKKNNVALD IVDFGETDDD KPEKLEALIS AVNSSDSSHI VHVPPGENAL 180
  181 SDVLISTPIF TGEEGGSGFA ASAAAAAATG AAGFEFDVDP NVDPELALAL RLSMEEERAR 240
  241 QEAIAKKAAE ESSGAENKDH ASSSNADSVM AEAEPASNAA DDKKDQPKED DDAQLLQQAL 300
  301 AMSMEEGSSG AAAADAAMAE AAVDDQDLAL ALQMSVQDAG GSSQSDMSKV FEDRSFVTSI 360
  361 LNSLPGVDPN DPSVKDLLAS LHGQGEQEKK EDKSDKPEDE KK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..186] PSI-BLAST 16.154902 Integrin alpha-x beta2
    2 View Details [187..306] PSI-BLAST 19.69897 Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition
    3 View Details [307..402] MSA 1.056988 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  4.02098822555334 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  3.82496592594463 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.72596563304893 bayes_pls_golite062009
  • binding
    		•  3.32950434867692 bayes_pls_golite062009
  • hydrolase activity
    		•  2.72944528058473 bayes_pls_golite062009
  • protein binding
    		•  1.4332924081006 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.41389987484225 bayes_pls_golite062009
  • DNA binding
    		•  1.27751137443334 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.45109468643752 bayes_pls_golite062009
  • protein complex binding
    		•  0.0341925447010603 bayes_pls_golite062009
  • protein heterodimerization activity
    		•  0.0195372592716698 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle