| Protein: | rpb4 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 135 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpb4.
| Description | E-value | Query Range |
Subject Range |
|
|
202.0 | [0..3] | [134..227] |
|
|
164.0 | [0..2] | [134..18] |
|
|
161.0 | [0..6] | [134..102] |
|
|
160.0 | [0..2] | [134..8] |
|
|
158.0 | [0..6] | [134..13] |
|
|
155.0 | [0..19] | [134..505] |
|
|
153.0 | [0..6] | [134..12] |
|
|
152.0 | [0..7] | [134..14] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MPRAIFEEDA AQLKLGPEFE NEDMLTVSEA KILIETVLAQ RARETNGEIP MTDVMKKTVA 60
61 YFNVFARFKT AEATYACERI LGNRFHKFER AQLGTLCCED AEEARTLIPS LANKIDDQNL 120
121 QGILDELSTL RKFQD
|
| Detection Method: |  |
| Confidence: | 41.045757 |
| Match: | 2c35A |
| Description: | Subunits Rpb4 and Rpb7 of human RNA polymerase II |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-directed RNA polymerase activity | 8.43501887532465 | bayes_pls_golite062009 |
| RNA polymerase activity | 8.43501887532465 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 7.79299049190673 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 7.79299049190673 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 5.88847066010291 | bayes_pls_golite062009 |
| N-acetyltransferase activity | 5.64167948892069 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 5.61328590649468 | bayes_pls_golite062009 |
| N-acyltransferase activity | 5.24793615322916 | bayes_pls_golite062009 |
| acetyltransferase activity | 4.75295723552983 | bayes_pls_golite062009 |
| transferase activity | 4.57125212908013 | bayes_pls_golite062009 |
| acyltransferase activity | 3.94406317857222 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 3.89451113558527 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups | 3.66048758356007 | bayes_pls_golite062009 |
| transcription regulator activity | 2.4721848902664 | bayes_pls_golite062009 |
| binding | 1.9212205923594 | bayes_pls_golite062009 |
| catalytic activity | 1.17990683373825 | bayes_pls_golite062009 |
| protein binding | 0.497114544861103 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 0.430689791429257 | bayes_pls_golite062009 |
| ribonuclease activity | 0.35631508447468 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.288686121121112 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.19197002346626 | bayes_pls_golite062009 |
| ribonuclease III activity | 0.0092766021353235 | bayes_pls_golite062009 |
